Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01770 261 / 1e-87 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021809 [exp] 268 / 3e-90 AT2G01770 413 / 3e-148 vacuolar iron transporter 1 (.1) Lus10001589 [exp] 226 / 2e-73 AT2G01770 358 / 5e-126 vacuolar iron transporter 1 (.1) Lus10003706 [exp] 66 / 2e-12 AT2G01770 115 / 1e-30 vacuolar iron transporter 1 (.1) Lus10034583 [exp] 0 / 1 AT2G01770 317 / 2e-111 vacuolar iron transporter 1 (.1) Lus10001588 [exp] 0 / 1 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104100 [exp] 293 / 3e-100 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1) Potri.010G104200 [exp] 261 / 8e-88 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10003704 pacid=23179479 polypeptide=Lus10003704 locus=Lus10003704.g ID=Lus10003704.BGIv1.0 annot-version=v1.0 ATGGTAGAAAATGGGAACACGTCGTCGGCGACAGTCACCGCCGGCACCGTTCATGCACCCGAAAGCATTATTAATAATCAGTTATGCCAGAAGCTGCTTT TGGAAGACCACAAAGAGAAACACTTCCTTTCACGGGAGGTGGTCAGGGACATCATCATCGGACTCTCCGACGGCCTCACCGTCCCTTTCGCCCTCGCCGC TGGCTTGTCCGGCGTCGAGGCCACTTCCCAACTTATCCTCGTCGCCGGCGTTGCTGAGGTGGCTGCTGGGGCCATCTCCATGGGCCTTGGAGGGTATTTG GCCGCCCAGAGCGAAGCCGATCACTACATGAGGGAGTTGGAACGTGAAGAGCAAGAGATCGTCCTCGTCCCGGATATTGAGGCAGCAGAGTGTGGAGAAA TACTAGCCCAATACGGCGTCGCACCAAACGAGGCTGAGCCAGTCTTGAATGCTCTCAGGAGGAACCCTCACCATTGGCTCGCTTTCATGATGAAGTTCGA GCTGGGGCTGGAGAAACCGGAGTCAACGAGGGCGATCCAGAGCGCCGCGACGATCGCCGCCTCGTACGTGGTCGGAGGGATTTTCCCGCTGCTTCCGTAC ATGGTGATCGCTTCCTCCGGCCAAGCTGTGGTCGCCTCCGTGGTGGTAACCCTGGTGGCGCTGGTGGCGTTCGGATTCGTCAAGGCTCATTTCACCGGCG ACAAGAAGGCTCGGTTCAAGACCGCAATCCAGACCGCGTTCGTCGGAGCCGTCGCTTGCTCCGCCGCTTACGGCATCGCGAGGCTCGTCCGTACTTCCAC CTACACACCGGCGATGATCAATTGA
AA sequence Show only first row Show all	>Lus10003704 pacid=23179479 polypeptide=Lus10003704 locus=Lus10003704.g ID=Lus10003704.BGIv1.0 annot-version=v1.0 MVENGNTSSATVTAGTVHAPESIINNQLCQKLLLEDHKEKHFLSREVVRDIIIGLSDGLTVPFALAAGLSGVEATSQLILVAGVAEVAAGAISMGLGGYL AAQSEADHYMRELEREEQEIVLVPDIEAAECGEILAQYGVAPNEAEPVLNALRRNPHHWLAFMMKFELGLEKPESTRAIQSAATIAASYVVGGIFPLLPY MVIASSGQAVVASVVVTLVALVAFGFVKAHFTGDKKARFKTAIQTAFVGAVACSAAYGIARLVRTSTYTPAMIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	1.4	0.8906
AT4G24204			RING/U-box superfamily protein...		Lus10010392 [exp]	5.7	0.7490
					Lus10005297 [exp]	6.2	0.8868
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	7.5	0.8868
					Lus10013260 [exp]	8.7	0.8868
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	9.7	0.8868
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	9.7	0.6797
					Lus10006529 [exp]	10.7	0.8868
					Lus10035557 [exp]	11.5	0.8868
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	12.3	0.8868

Compare expression of checked genes

Lus10003704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.