Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT1G32420 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT5G65850 58 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT2G02660 57 / 1e-08 F-box associated ubiquitination effector family protein (.1) AT1G47765 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT2G40920 55 / 4e-08 F-box and associated interaction domains-containing protein (.1.2) AT1G50870 55 / 4e-08 F-box and associated interaction domains-containing protein (.1) AT1G19160 55 / 5e-08 F-box family protein (.1) AT1G53790 54 / 1e-07 F-box and associated interaction domains-containing protein (.1.2) AT2G16220 53 / 2e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034309 [exp] 315 / 1e-104 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 251 / 7e-79 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011210 [exp] 239 / 6e-74 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 225 / 7e-70 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 220 / 3e-66 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 219 / 1e-64 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 210 / 2e-63 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 210 / 3e-63 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 205 / 2e-60 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 69 / 1e-12 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 67 / 5e-12 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.014G162600 [exp] 54 / 7e-08 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 54 / 8e-08 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.018G007900 [exp] 48 / 7e-06 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.008G144000 [exp] 48 / 8e-06 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 47 / 1e-05 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.007G130600 [exp] 45 / 7e-05 AT3G07870 97 / 1e-21 F-box and associated interaction domains-containing protein (.1) Potri.010G207500 [exp] 44 / 0.0002 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 44 / 0.0002 AT3G06240 138 / 5e-37 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10003705 pacid=23179485 polypeptide=Lus10003705 locus=Lus10003705.g ID=Lus10003705.BGIv1.0 annot-version=v1.0 ATGCGGTTCAAGTGCGTCTGTAAAGCTTGGAAATCGATCATCGAAGAAGATTCCAACTTCATTAATTTACATTATACTCATTCACAAGCACGCCCAGGAT TGTTAATTATGGTCCCCAGTTGGCAAGAATCCAGTGGTGATGGTCTTGAATTATATTTGATGTCGGGTGATTTGCACTGTAATGGCAGAGGAGCCAATGT TGACAGCGCAAAGAGAATAATACATTCATCATCAATCCCAGAAAATGTCATGGTCGATTTTCTGGGACCTGTTAGAGGATTGCTCTGTTTGGTTAACCTC TTTGATGTACAGATATGCAACGTCAGCACCGGAGTAGTAACACCATGGATCAAGTCAAGAGTATCCATGACTGTAAGAAACCAATATCCAGAATGTTTCT TTGGATTCGATCCTGCTACTGGAAACCATAAAGTTATGTTTCTGTGGAGTGGATACGAAAACTCACCACCAGTTTGTGAGGTCTTAACTGTAGGGGAAAG CAGCTGGAGAATAATTGACAGTGTACCACCACTCAACCCCTATGCAGCACCCAGTATTTGTGTCAACGGTTGTGCATATTGGCTTACTTCCCAGGGCTCC CCACCTTGGTCTGACCCCTACAATCCATCAGACCCTGATGATATACTTGATGAGGGGGGGTATTCTGTATCCCTGATGGTGTTTGATTTTGGATCAGAGC AGTTTAGGATCATCCCAATTCCTGAATTCGCCCGTCTGCTTCTGCTTACAAGGCCACTCTACGAGAATGAATTAATAGACGTGGATGGGTGTCCGACCAT CATACATCATGATGATATGCATTATGGCATACGCACCATGAAGATGTGGAAGTTGCAGGATTGCAACAACAACAACAAGGAGAGTCGAACATCTCCTAAT GCTAATGCTAATACTATTACCAGTAGTAGTGAGAAAGATTGGACTGAAGTGGTAATTAGACTACCTTGTTCTATACATCTTGGTTGTTGTGTCTTTTTCC ATTCAATACCTGGGGAAGACGTGATAATCTTAGAAACCTACGAGATACCGCCACGGCGTGGCTTAAGTCATCCTAATTGGCAGAGGAATGTTAAGCTTTT CCGCTTTTATCGTTACGATCTCAAGACGGAGACTTTCAGCGACTTTGAAGTCAAAGGAATTCCCTTTGTTCAGAATGACTGGGAGACTGACTGCGCGATT TTGATAGAAAGTCTTTTGCCTGTTGACAAGACACTGCAACAAAACTAG
AA sequence Show only first row Show all	>Lus10003705 pacid=23179485 polypeptide=Lus10003705 locus=Lus10003705.g ID=Lus10003705.BGIv1.0 annot-version=v1.0 MRFKCVCKAWKSIIEEDSNFINLHYTHSQARPGLLIMVPSWQESSGDGLELYLMSGDLHCNGRGANVDSAKRIIHSSSIPENVMVDFLGPVRGLLCLVNL FDVQICNVSTGVVTPWIKSRVSMTVRNQYPECFFGFDPATGNHKVMFLWSGYENSPPVCEVLTVGESSWRIIDSVPPLNPYAAPSICVNGCAYWLTSQGS PPWSDPYNPSDPDDILDEGGYSVSLMVFDFGSEQFRIIPIPEFARLLLLTRPLYENELIDVDGCPTIIHHDDMHYGIRTMKMWKLQDCNNNNKESRTSPN ANANTITSSSEKDWTEVVIRLPCSIHLGCCVFFHSIPGEDVIILETYEIPPRRGLSHPNWQRNVKLFRFYRYDLKTETFSDFEVKGIPFVQNDWETDCAI LIESLLPVDKTLQQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	0	1
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	2.0	0.8976
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	2.4	0.9223
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	3.9	0.8898
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	4.2	0.8852
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	7.9	0.8833
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	8.1	0.9014
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	8.8	0.8498
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	9.9	0.9075
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	11.6	0.8671
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	12.0	0.8784

Compare expression of checked genes

Lus10003705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.