Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01770 76 / 6e-16 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001589 [exp] 96 / 2e-23 AT2G01770 358 / 5e-126 vacuolar iron transporter 1 (.1) Lus10021809 [exp] 86 / 1e-19 AT2G01770 413 / 3e-148 vacuolar iron transporter 1 (.1) Lus10034583 [exp] 82 / 5e-18 AT2G01770 317 / 2e-111 vacuolar iron transporter 1 (.1) Lus10003704 [exp] 55 / 1e-08 AT2G01770 315 / 1e-108 vacuolar iron transporter 1 (.1) Lus10001588 [exp] 0 / 1 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104100 [exp] 83 / 1e-18 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1) Potri.010G104200 [exp] 80 / 1e-17 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10003706 pacid=23179456 polypeptide=Lus10003706 locus=Lus10003706.g ID=Lus10003706.BGIv1.0 annot-version=v1.0 ATGGCGACGACACATCCAGCGAAGCTCGAGCCGGAAAAGCAGAACTCACTAAACCACCACAAGGAGAACCACTTTACCGCCGGAGACACCGATGATGATG TAGCGGACGGCGTCTCCGGCGGCCTAACCGTCCCCTTCGCACTCGCCGCCGGCTTGTCCGCCGCCAACGCCCCTTCCTCCATCGTTCTCACCGCCGGCCT CGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGGTTCGAGCTGGGACGGGAGAAGCCGGATCCACAGAGAGCAGTTCGAAGTGAGATGACC ATATCGGGATCGTACATAGTCGGAGGATTAGTACCACTAATACCATACATGTTCATGCAGAAAGCTCAGGACGCGGTGATCGCATCCGTCGTACTAACCC TAATAACTCTGCTACTGTTGGATACGCAAAGGGTTGATTCACGGGGAGCCGGCCCTTCATCAGCGCATTATAAACCGCTCTCATTGGGGCCATTGCTTCT GCTGCCGCTTTCGGCATTGCTAAAGCTAATGAATCAGAACTGTTTCTTGTTCTGCAAGAAACCTCACAGGGGTCGGTCTAGAGCTAATGATTCACCGAGA AGATTCAACCGGAACCATAACGCAGCATTCCAATTTGATTATACCACAAAACAAAGGGTAAATGTGAATATAGCAGCAGCTTATATCTGCAGGCTTGCAC TTACTGCAACAAAGCCTGAGTCTTTTTTCAAGGGTTCTCCGATACAAATACTCTCAATAACACCGTGCGGTACGAGTATAGGCGTTACTGTCTAG
AA sequence Show only first row Show all	>Lus10003706 pacid=23179456 polypeptide=Lus10003706 locus=Lus10003706.g ID=Lus10003706.BGIv1.0 annot-version=v1.0 MATTHPAKLEPEKQNSLNHHKENHFTAGDTDDDVADGVSGGLTVPFALAAGLSAANAPSSIVLTAGLAEVAAGAISMGLGGFELGREKPDPQRAVRSEMT ISGSYIVGGLVPLIPYMFMQKAQDAVIASVVLTLITLLLLDTQRVDSRGAGPSSAHYKPLSLGPLLLLPLSALLKLMNQNCFLFCKKPHRGRSRANDSPR RFNRNHNAAFQFDYTTKQRVNVNIAAAYICRLALTATKPESFFKGSPIQILSITPCGTSIGVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003706 [exp]	0	1
					Lus10020900 [exp]	1.4	0.8864
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	3.5	0.8644
					Lus10011017 [exp]	3.9	0.8514
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	6.9	0.8134
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10019692 [exp]	9.2	0.8380
					Lus10033476 [exp]	9.8	0.8463
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	9.9	0.8160
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	9.9	0.8069
					Lus10014515 [exp]	11.4	0.8403
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	11.8	0.8233

Compare expression of checked genes

Lus10003706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.