Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67970 259 / 1e-83 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT4G17750 204 / 6e-61 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 200 / 1e-59 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 194 / 2e-57 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G22830 180 / 1e-52 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 179 / 9e-52 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 171 / 9e-50 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G54070 169 / 2e-49 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT5G03720 157 / 4e-44 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G51910 153 / 8e-44 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001591 [exp] 619 / 0 AT1G67970 285 / 1e-93 heat shock transcription factor A8 (.1) Lus10001590 [exp] 320 / 3e-110 AT1G67970 81 / 3e-18 heat shock transcription factor A8 (.1) Lus10011065 [exp] 213 / 1e-64 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 211 / 6e-64 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040091 [exp] 208 / 1e-62 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 207 / 2e-62 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040911 [exp] 191 / 3e-56 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10039376 [exp] 178 / 2e-52 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 177 / 1e-51 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136800 [exp] 364 / 1e-124 AT1G67970 322 / 5e-108 heat shock transcription factor A8 (.1) Potri.010G104300 [exp] 360 / 8e-123 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1) Potri.001G138900 [exp] 214 / 9e-65 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 207 / 5e-62 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.008G157600 [exp] 188 / 2e-56 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 187 / 4e-56 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 191 / 6e-56 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.005G214800 [exp] 184 / 9e-55 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 180 / 3e-53 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G148200 [exp] 169 / 7e-48 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10003707 pacid=23179475 polypeptide=Lus10003707 locus=Lus10003707.g ID=Lus10003707.BGIv1.0 annot-version=v1.0 ATGGTGAAATCCGGCGATGATGGAACCTCTCTGTCGATCACTCCCTTCTTGAAGAAATGCTACGATATGGTGGACGACGAATCCACCAACTCCCTAATTT CATGGTCTCCGAACTGCGACAGTTTCATCATATGGGACATGACTGAATTCTCCGTCAATCTGCTGCCTGCCTACTTCAAACACAGCAACGGCGCGAGCTT CGTTCGGCAGCTCAACATCTACGGATTTAGGAAAGTCGATCCAGACCGGTGGGAATTTGCTAATGATGGATTTATCAGAGGTAAAAAGCATTTGCTCAAG AACATCTCCAGACGCAAGAACCCTCAAGGCTCAGGAAACCGGAGGGCAACAACACAGGAAAAGGAGAAACCTGTTGAACCTAGTGAGGAAGTCGAGAAGG TAGACCTTTGGAAAGATATAGAGAATCTGAAGATCGATAAGAACGCTGTGACTCAGGAGCTTGTTAAGCTCAGAAAACACCAGGAAACCTCCGACGAGAA GCTGCTTCTCTTGAGGGATCGTCTCAAAGGGATGGAAACAAATCAGCAGCAGATGCTTTCGTTCTTAGTAATGGTTATGCAGCACCCGGGCTTTGTGGTT CAGCTACTTCATCCGAAAGAAAATAGCTGGAGGATGGCCGAACCAGGAGTCATAACCGAGCAAGTTGACGAACCGTCGATTTCTGATGGAAGGATAGTGA GATACCAACCGCAAAAAGATCACAAAGTCGGCGAACCGGTGCACCAACCGCAAAAAGATGATTCAAACTCGTCATGGGATTGGATGAAAGATTTCTCCAT AAGTTCTGATTTCATGAAGTTGCTTTCAGAACAGAACCTTTCCACAGGAAGTAACAGTCCGTTTGTTATACCGGAACTTCAGGATGATAGTTCTTGGGAA CAGATTCTCCGGGGCGCTTCTTCCCTCGCTGATGATCGGGATGCAAATGCAGACGGTGAAGAGGAGGAGCACGGTGATGCCCAAGTTGAAACGGGACGGA GTTTGCTTAGTACGTTGGTGAGCACCGATCTTTTGGAGGAACAAATGAGAGAATTCACGGCACTGGTGGGAGTTCCATCCTTATGCTCGGCTTCTAAAAC CGAGACCAAGGATGGAATGTAG
AA sequence Show only first row Show all	>Lus10003707 pacid=23179475 polypeptide=Lus10003707 locus=Lus10003707.g ID=Lus10003707.BGIv1.0 annot-version=v1.0 MVKSGDDGTSLSITPFLKKCYDMVDDESTNSLISWSPNCDSFIIWDMTEFSVNLLPAYFKHSNGASFVRQLNIYGFRKVDPDRWEFANDGFIRGKKHLLK NISRRKNPQGSGNRRATTQEKEKPVEPSEEVEKVDLWKDIENLKIDKNAVTQELVKLRKHQETSDEKLLLLRDRLKGMETNQQQMLSFLVMVMQHPGFVV QLLHPKENSWRMAEPGVITEQVDEPSISDGRIVRYQPQKDHKVGEPVHQPQKDDSNSSWDWMKDFSISSDFMKLLSEQNLSTGSNSPFVIPELQDDSSWE QILRGASSLADDRDANADGEEEEHGDAQVETGRSLLSTLVSTDLLEEQMREFTALVGVPSLCSASKTETKDGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	4.7	0.8774
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	5.7	0.8646
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	6.0	0.8530
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10015232 [exp]	9.3	0.8629
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	10.8	0.8007
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	12.0	0.8252
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033842 [exp]	12.2	0.7999
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	15.5	0.8291
AT5G67350			unknown protein		Lus10010401 [exp]	15.7	0.8494
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	17.6	0.8273

Compare expression of checked genes

Lus10003707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.