Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25145 355 / 7e-122 AtLpxC4 lipid X C4, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1) AT1G25054 355 / 7e-122 AtLpxC3 lipid X C3, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2) AT1G24793 355 / 7e-122 AtLpxC1 lipid X C1, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2) AT1G24880 356 / 2e-121 AtLpxC2 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3) AT1G25210 355 / 6e-121 AtLpxC5 lipid X C5, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001592 [exp] 533 / 0 AT1G24880 339 / 8e-116 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3) Lus10021282 [exp] 102 / 2e-25 AT1G25210 87 / 2e-20 lipid X C5, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106400 [exp] 391 / 4e-136 AT1G25145 391 / 6e-137 lipid X C4, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03331 [flax] [poplar] LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Representative CDS sequence Show only first row Show all	>Lus10003708 pacid=23179490 polypeptide=Lus10003708 locus=Lus10003708.g ID=Lus10003708.BGIv1.0 annot-version=v1.0 ATGGGGATTAAGCCCTTAACTAGGCTGAATATCCAGCTCGAACTCGGTTCCTTTATTTTTCGGTCTGGTCGAGCTTGGTTGGATCGAAAAAACTGCAGCT CGGGTTCGGGACAACATGAACACGATTGTTTTTACTGTTTGAAAATTTCTGTAAAAACAAACGCAGCTGAACTTCGTACGCAAATGGCGCTCACCAGAGG GATCATCTCCTGGAAATCGACTGGCAGGGTCCAGCAAACCCTAGCAAGAAGTCTGGAGCTGACCGGCGTCGGCCTCCACTCCGGCAAGTCATCAAACGTG CGAATCTCGCCGGAGCACGTGGGAAAGGGGAGGACCTTCGATTTCAATTCCAAGTGGAGCATCCTGGCGTCCGTTGACTTCGCGCTACGTCCTTCTCCAC TCTGCACCACTCTCTCCAAGGATGGAGTCAGCATCCGGACTGTGGAGCACTTGCTTTCAGCTCTTGAAGCTACCGGCGTCGACAACTGCAGGATCCAGAT CGACAGTGCGGACTCCGATGATTCCGAAGTTGAGGTTCCGATACTTGATGGTTCAGCTCTGAAATGGGTGGATTTGATTCGAGAAGTTGGTGTGAGAGTT GCGGTGGATGAGCATGGCTGCTCCTGTGAACGATTGGCTCCGCATTTGAATGAGCCGTACCATGTGAGGAATGGTGATGCTTTCGTTGCTGTTTTCCCTT CTCCAGAGCTTCGTATCACTTATGGGATTCACTTTCCTCAGGTTTCTGCAATTGGTTCTCAGTGGGTCACTTTCTCCTCCTTCGACGATTCTATGTATGT CAAGGAAATAGCTTCAGCAAGAACTTTTTGTCTACACGAGCAGGTGGAACAAATGCGCAATGCAGGACTAATTAAAGGGGGGTCGTTAGAGAATGCCATT GTTTGCAGTGCCACCGAAGGTTGGATCAACGGTCCTCTTCGATTCCCAGACGAACCATGTCGCCACAAAGTGTTGGACCTTATCGGCGACCTTTCCCTGC TTGCACAGTCGGGAAATCAAGGTCTTCCAGTGGCACACATAGTTGCCTACAAGGCAAGCAAGCAAAACTCTTTTCCAGATCTTTCTGGCGGACACGCACT TCATTCAGATTTCGTACGCGGCCTAGCAGAATCGTTCGTCCCGGATTACGCCAAAGGTCTTTTAGCTTTGTCTTCTTCATAG
AA sequence Show only first row Show all	>Lus10003708 pacid=23179490 polypeptide=Lus10003708 locus=Lus10003708.g ID=Lus10003708.BGIv1.0 annot-version=v1.0 MGIKPLTRLNIQLELGSFIFRSGRAWLDRKNCSSGSGQHEHDCFYCLKISVKTNAAELRTQMALTRGIISWKSTGRVQQTLARSLELTGVGLHSGKSSNV RISPEHVGKGRTFDFNSKWSILASVDFALRPSPLCTTLSKDGVSIRTVEHLLSALEATGVDNCRIQIDSADSDDSEVEVPILDGSALKWVDLIREVGVRV AVDEHGCSCERLAPHLNEPYHVRNGDAFVAVFPSPELRITYGIHFPQVSAIGSQWVTFSSFDDSMYVKEIASARTFCLHEQVEQMRNAGLIKGGSLENAI VCSATEGWINGPLRFPDEPCRHKVLDLIGDLSLLAQSGNQGLPVAHIVAYKASKQNSFPDLSGGHALHSDFVRGLAESFVPDYAKGLLALSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10003708 [exp]	0	1
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10001592 [exp]	4.0	0.9009
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	14.2	0.9048
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	15.7	0.8831
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	22.2	0.8557
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	22.9	0.8723
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	28.0	0.8663
AT1G71840			transducin family protein / WD...		Lus10032994 [exp]	30.6	0.8462
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	36.9	0.8668
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	40.3	0.8739
AT5G27950			P-loop containing nucleoside t...		Lus10033849 [exp]	52.8	0.8627

Compare expression of checked genes

Lus10003708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.