Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23170 542 / 0 Protein of unknown function DUF2359, transmembrane (.1.2) AT1G70770 528 / 0 Protein of unknown function DUF2359, transmembrane (.1.2) AT3G11880 337 / 3e-110 Protein of unknown function DUF2359, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001593 [exp] 966 / 0 AT1G70770 615 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10034590 [exp] 748 / 0 AT1G23170 616 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10021774 [exp] 702 / 0 AT1G23170 584 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110500 [exp] 624 / 0 AT1G23170 529 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.017G124300 [exp] 549 / 0 AT1G23170 507 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.004G091100 [exp] 549 / 0 AT1G23170 508 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.008G131800 [exp] 526 / 0 AT1G23170 466 / 5e-161 Protein of unknown function DUF2359, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10151 [flax] [poplar] TMEM214 TMEM214, C-terminal, caspase 4 activator
Representative CDS sequence Show only first row Show all	>Lus10003709 pacid=23179486 polypeptide=Lus10003709 locus=Lus10003709.g ID=Lus10003709.BGIv1.0 annot-version=v1.0 ATGGATTTCGCCAGCGAAGATCAGCAGATCGCCGCCGCAGTCGACGCCTCTAAGGCGATGGAGAATCCCGATCACGGCTGGCAGAAGGTGACCTACGCCA AGAAGCACCGCAAGCAGAAACCAGGTGCCGCCGCCGCCGCCGGGAAAATCAACGGGACTGTTGCACCGGGTGACAACGAGAAGGGGAACGTGTTCCGGGG TTTGGAGCAGCAATCGGAGGAGCGGCGCCGGAGGATTTTGGAATCAGAGAGATCTGCGATTGCAGCTGCCTCCTCCACTGCCGGCGCGGGGAGCTCGAGG GACCGATCTGACGACGACGATGATGAATACGACGATAGCGACGATGCTAGGGTTACCAAAGGCGATGAGAAGGGCAATGAGGAGAAGAAGGTGAAGCAGA AGAAGCCTAAGAAGCCGAAGATCACCGTTTCTGAAGCCGCTGCTAAGATCGACGAGTCCGATCTCGCGGCTTTTCTTCTCGATATATCCGCTTCGTATGA GGGGCAGCAGGAGATTCAGCTCATGAGATTTGCTGATTATTTTGGGAGGGCATTCTCAGCTGTGAGCTCGGCTCAGTTCCCATGGGTGAAGCTGTTCAGG GAGAATCCTATCACCAAAATTGTCGAGGTTCCTCTGTCTTACATCGCGGAACCCATATATAAGACATCAATTGACTGGATTTCCCAACGCTCTGTTGAGG CACTTGGGTCCTTTGTATTATGGTGTCTGGACAGTATCCTTGCGGATTTGGCAAGCCAGAATGTTGGTCCCAAAGCTGCCAAGAAGGGTGCACAACAAGC ATCGTCAAAGTCCCAAGTTGCCATCTTTGTGGTTTTAGCAATGGTCTTGCGACGGAAACCTGACTCATTGGTCAGTGTGTTGCCGACATTGAAAGATTCC TCAAAGTATCAAGGGCAAGACAAACTCCAAGTTATTGCTTGGACCATTGCGCAGGCTTCTCAAGCAGATTTAGCCGTGGGGTTGCTCTCTTGGACACACA ACCTTTTGCCCATAGTGAGCGGGAAAAGTTCTAATCCACTGTCTAGGGATGTAATTTTGCAAGTGGTGGAGAAGATTTTAGCAGCTCCAAAAGCTAGGAC AATTTTACTAAATGGTGCTGTAAGGAAAGGGGAACGTCTAGTCCCACCTACTGCATTGGAGATGTTGCTTAGAGTTACCTTCCCTTCGTCTTCAACTAGA GTAAAGGCTACTGAGAGATTCGAAGCAATATATCCCACCCTGAAAGAGGTGGCTCTTGCTGGCTCTGCTGGAAGTAAAGCTATGAGGCAAGTAGCACAGC AGACATTAAGCTTTTCTCTGAAAGCGGCGGGTGAAGGCAATCCCGAGCTGTCCAAGGAAGCTGCTTCCATCACCATCTGGTGTTTCACACAAAATTCTGA GTGCTACAAGCAGTGGGTGAAGGTGTATCAGGACGATCTAAGAGCCAGCGTTGTGGTTCTCAAGAGAATCTCCGAGCAATGGAAGGAGCTCTCCGAGAAA CTCGCTCCTTTCGATCCGCTCAGGGAGGTCATCCGAGATTTCAGGCAAAAGAACGAGAAAACAATGGCGAAAGGACACAAAGACGACAAGGACCTAGCTC TCTACAAAGAATCGGACAAGTACTGCAAGACGATACAAGGAAAGGTATCTCGAGGAAACAGCTGCCTGAAAGGAATGGCGATCGTCGTCGTTGCATTGGC CATCGGTGCTGCCGTCACAACCCAGAACTTGGAGGACTGGGACTGGCAGAAACTGTCTGTGTTCGTCAACTCTCAGTTGTCTTACTGA
AA sequence Show only first row Show all	>Lus10003709 pacid=23179486 polypeptide=Lus10003709 locus=Lus10003709.g ID=Lus10003709.BGIv1.0 annot-version=v1.0 MDFASEDQQIAAAVDASKAMENPDHGWQKVTYAKKHRKQKPGAAAAAGKINGTVAPGDNEKGNVFRGLEQQSEERRRRILESERSAIAAASSTAGAGSSR DRSDDDDDEYDDSDDARVTKGDEKGNEEKKVKQKKPKKPKITVSEAAAKIDESDLAAFLLDISASYEGQQEIQLMRFADYFGRAFSAVSSAQFPWVKLFR ENPITKIVEVPLSYIAEPIYKTSIDWISQRSVEALGSFVLWCLDSILADLASQNVGPKAAKKGAQQASSKSQVAIFVVLAMVLRRKPDSLVSVLPTLKDS SKYQGQDKLQVIAWTIAQASQADLAVGLLSWTHNLLPIVSGKSSNPLSRDVILQVVEKILAAPKARTILLNGAVRKGERLVPPTALEMLLRVTFPSSSTR VKATERFEAIYPTLKEVALAGSAGSKAMRQVAQQTLSFSLKAAGEGNPELSKEAASITIWCFTQNSECYKQWVKVYQDDLRASVVVLKRISEQWKELSEK LAPFDPLREVIRDFRQKNEKTMAKGHKDDKDLALYKESDKYCKTIQGKVSRGNSCLKGMAIVVVALAIGAAVTTQNLEDWDWQKLSVFVNSQLSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	1.0	0.9826
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	1.4	0.9619
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	2.0	0.9524
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	3.0	0.9527
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	4.5	0.9507
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	6.4	0.9227
AT1G31910			GHMP kinase family protein (.1...		Lus10012121 [exp]	6.9	0.9177
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	8.9	0.9229
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	9.0	0.9445
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10020606 [exp]	9.5	0.9046

Compare expression of checked genes

Lus10003709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.