Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 158 / 3e-50 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 158 / 6e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G70790 156 / 3e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70810 152 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 152 / 9e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 149 / 8e-47 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 144 / 6e-45 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G73580 141 / 1e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 139 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 138 / 2e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001594 [exp] 275 / 6e-96 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 197 / 5e-66 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10021775 [exp] 195 / 1e-64 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 157 / 5e-49 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 154 / 2e-47 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10033585 [exp] 138 / 2e-42 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 136 / 2e-41 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10017629 [exp] 135 / 3e-41 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018005 [exp] 127 / 5e-38 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131500 [exp] 175 / 7e-57 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 171 / 3e-55 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 156 / 1e-49 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 154 / 5e-49 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 132 / 2e-40 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G372000 [exp] 91 / 2e-22 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 91 / 2e-22 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.006G004600 [exp] 86 / 5e-22 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 82 / 2e-20 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 83 / 3e-19 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10003710 pacid=23179489 polypeptide=Lus10003710 locus=Lus10003710.g ID=Lus10003710.BGIv1.0 annot-version=v1.0 ATGCAGAAGCTCAAGACTAAAACGGTGAAGAATAACTGTAACCCGGAATGGAATGAAGAGCTCACCCTCTCCATCAAGAACCCTGATCTCCCCATCTTGC TTACTGTATATGACAAGGACACTCTCAGCACGGACGACAAGATGGGAGAAGTGAAAATAAACCTGAAACCGTACGTGGACGCTCTCCTAATCGGGGCGAA GAACCTTCCCAACGGCTGCTGCATCAAGATCGTCCAGCCGACGGAACATAACCACTTAGCCGAGGAGAGCCGCATAACTTGGCACGAGGGGAAGCTCCTC CAGGACATGGTTCTGAAACTGCAGCATGTCGACTCCGGCGAACTGGACGTCCAGATTGAATGGATTGATGTCCCTGGTTGCAAGGGTCTCCTCTCCCGCG ATGGCGAGTTCGACTTCATATAG
AA sequence Show only first row Show all	>Lus10003710 pacid=23179489 polypeptide=Lus10003710 locus=Lus10003710.g ID=Lus10003710.BGIv1.0 annot-version=v1.0 MQKLKTKTVKNNCNPEWNEELTLSIKNPDLPILLTVYDKDTLSTDDKMGEVKINLKPYVDALLIGAKNLPNGCCIKIVQPTEHNHLAEESRITWHEGKLL QDMVLKLQHVDSGELDVQIEWIDVPGCKGLLSRDGEFDFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	2.0	0.9213
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	3.2	0.8952
AT1G60783			unknown protein		Lus10004622 [exp]	3.5	0.9117
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	3.7	0.8881
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	3.7	0.9133
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	4.0	0.9059
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	4.5	0.9097
AT1G60783			unknown protein		Lus10026693 [exp]	4.6	0.9125
					Lus10033727 [exp]	5.2	0.8997
AT3G14880			unknown protein		Lus10039193 [exp]	5.6	0.8719

Compare expression of checked genes

Lus10003710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.