Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 501 / 3e-178 Protein kinase superfamily protein (.1.2) AT4G23140 338 / 9e-111 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 337 / 1e-110 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23270 329 / 1e-107 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G38830 327 / 2e-106 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23230 321 / 3e-106 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G00960 314 / 2e-105 Protein kinase superfamily protein (.1) AT4G23280 322 / 1e-104 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23160 333 / 2e-104 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23310 325 / 2e-104 CRK23 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001595 [exp] 724 / 0 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018382 [exp] 347 / 3e-114 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 341 / 8e-112 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 334 / 3e-109 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 331 / 6e-108 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10038940 [exp] 316 / 9e-106 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10010927 [exp] 320 / 1e-105 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10009631 [exp] 313 / 3e-104 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 311 / 4e-104 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109700 [exp] 550 / 0 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G132300 [exp] 549 / 0 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.004G026350 [exp] 339 / 2e-111 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 326 / 7e-110 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.006G071300 [exp] 326 / 4e-109 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G024900 [exp] 332 / 3e-108 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 330 / 6e-108 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024404 [exp] 327 / 2e-106 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 326 / 4e-106 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 325 / 6e-106 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003711 pacid=23179476 polypeptide=Lus10003711 locus=Lus10003711.g ID=Lus10003711.BGIv1.0 annot-version=v1.0 ATGTCAAAGGCTAAGGGTTTCGTCCACAATCTGATGAAGCCTTTCAAGTTTGGGTCCAGAAAAGATGGAGAGAATGAAGGGGATTTGGAGAAGATTGCTG CACAGGAGAGGAAGCAGTTTGAGTTCCAGGCTTTGGTTTCAGCTACCAGAGATTTCCACCCGTCTCACAAGCTTGGTGAAGGTGGCTTTGGACCAGTTTA CAAGGGAAAGCTGAGTGACGGTAGGGAGATTGCAGTGAAGAGACTTTCCCTCAGCTCTAGGCAAGGCAATACTGAGTTCACAACCGAAGCGAAGCTATTG GCAAGGGTCCAACATCGCAATGTTGTTAGCTTGTTAGGCTACTGCGTGCACGACATGGAGAAACTGCTGGTTTACGAGTACGTTGCTCACGAGAGCCTCG ACAAGCTTCTTTTCAAGTCTAATAGTAAAATGCATCTTGATTGGAAGCAAAGGTTCGACATAATCATGGGCATCGCTCGGGGCCTGCAGTACCTCCACGA GGACTCGCACAACGTCATAATCCACCGCGATATCAAAGCCAGCAACATCTTGCTCGACGACAGATGGATACCGAAGATCGCAGACTTTGGAATGGCTCGC CTCTTCCCCGAAGATCAAACGCATGTCAACACTCGTGTAGTCGGTACCAATGGTTATATGGCTCCAGAGTATGTCATGCACGGACGTCTATCAGTGAAAG CTGATGTATATAGCTTCGGCGTTTTGGTCCTCGAGCTCATCAGCGGGCAGAAAAACTCAACCTTCGCAACCTCAAATGCGGACTATAACCTGCTGGAGTG GGCATACAAGCTCTACAAAGACGGCAAGAGCATGGACCTTATGGACCCGACACTAGTGACATCAGCAGCTTCCGAATTGGTCAAAACCTGCATTCACGTA GCACTGCTCTGCACACAAGGTGAACCCAACTCACGGCCAACGATGAGACAGGTAGTTCTCTGGCTATCCAAGAAGCCCGGCCACCTTGAAGAGCCAACAA GGCCGGTGGTGCCCGGTTCGTGGTACAGAAGATCGCGTAGGCCCCACACAGGAACAGGAACGTCTTTGACTGCAGGGACTGTTAAATGGTGTTAA
AA sequence Show only first row Show all	>Lus10003711 pacid=23179476 polypeptide=Lus10003711 locus=Lus10003711.g ID=Lus10003711.BGIv1.0 annot-version=v1.0 MSKAKGFVHNLMKPFKFGSRKDGENEGDLEKIAAQERKQFEFQALVSATRDFHPSHKLGEGGFGPVYKGKLSDGREIAVKRLSLSSRQGNTEFTTEAKLL ARVQHRNVVSLLGYCVHDMEKLLVYEYVAHESLDKLLFKSNSKMHLDWKQRFDIIMGIARGLQYLHEDSHNVIIHRDIKASNILLDDRWIPKIADFGMAR LFPEDQTHVNTRVVGTNGYMAPEYVMHGRLSVKADVYSFGVLVLELISGQKNSTFATSNADYNLLEWAYKLYKDGKSMDLMDPTLVTSAASELVKTCIHV ALLCTQGEPNSRPTMRQVVLWLSKKPGHLEEPTRPVVPGSWYRRSRRPHTGTGTSLTAGTVKWC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	0	1
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	5.7	0.7576
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10021919 [exp]	7.5	0.6999
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	9.8	0.7600
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	11.7	0.7595
AT3G19340			Protein of unknown function (D...		Lus10041510 [exp]	17.1	0.6574
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	22.8	0.7370
AT3G55390			Uncharacterised protein family...		Lus10001709 [exp]	23.9	0.7375
AT4G02630			Protein kinase superfamily pro...		Lus10018722 [exp]	24.7	0.7273
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	25.5	0.6697
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	25.9	0.7219

Compare expression of checked genes

Lus10003711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.