Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23190 1017 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) AT1G70730 1008 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT5G51820 692 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001596 [exp] 1179 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10021777 [exp] 1122 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10034595 [exp] 1108 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10031669 [exp] 687 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10027400 [exp] 661 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109500 [exp] 1065 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Potri.008G132500 [exp] 1055 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Potri.015G134700 [exp] 694 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.012G132500 [exp] 690 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF00408 [flax] [poplar] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10003712 pacid=23179484 polypeptide=Lus10003712 locus=Lus10003712.g ID=Lus10003712.BGIv1.0 annot-version=v1.0 ATGGTGTTCAAGGTCTCCACCGTAAAGTCGTCGCCGATCGATGGCCAGAAGCCAGGAACCTCCGGCCTCCGCAAGAAGGTAAAAGTGTTCATGCAACAGC ATTACCTGGAAAATTTCGTTCAATCAACATTCAATGCGCTCACAGCAGAGAAAGTGAGAGGTGCTACTCTTGTTGTCTCTGGAGATGGTCGTTACTATTC TAAGGAGGCTATTCAGGTTATTATCAAGATGGCTGCTGGCAACGGGGTAAGGCGTGTTTGGGTTGGTCAGAACGGATTACTCTCAACTCCGGCTGTCTCG GCTGTGATACGTGAACGAGTTGGTGCAGATGGATCCAAGGCAACGGGTGCATTTATATTGACAGCAAGTCACAATCCAGGAGGGCCTGATGAGGATTTTG GTATCAAATATAACATGGAAAATGGAGGCCCAGCTCCAGAGGGAATCACAGATAAGATTTATGAGAACACCAAAACGATAAAGGAGTACTTAACCTCTGA TGTTCCTGATGTTGATATTTCTGCAACCGCTGTTACTAGCTTCACTGGGCCCGAGGGACAGTTTGACGTGGATGTTTTTGACCCTGCAAGTGATTATGTT AAATTGATGAAGTCAATTTTTGACTTCGAGTCAATGAAGAAGCTGGTAACATCTCCAAACTTCAGTTTTTGTTACGATGCACTACACGGAGTTGGCGGTG CTTATGCAAAAAGCATTTTTGTGGAGGAGCTTGGTGCAAAAGAGAGTTCATTGCTGAACTGCGTACCAAAGGAAGACTTTGGAGGAGGGCACCCTGATCC CAATCTCACATATGCAAAGGAGTTAGTTGCTCGAATGGGGCTAGGAAAATCAAGCAGTGATGTTGAACCACCAGAATTCGGTGCTGCTGCTGATGGCGAT GCAGATCGCAACATGATCCTGGGTAAAAGGTTCTTTGTTACTCCATCAGATTCTGTGGCTGTCATTGCTGCAAATGCAGTTGAATCCATCCCCTATTTCT CTTCTGGACTGAAAGGAGTTGCCAGGAGCATGCCAACATCAGCTGCTCTTGATGTTGTGGCAAAAAGTCTGAATTTGAAATTCTTTGAGGTGCCCACTGG CTGGAAGTTCTTTGGTAACTTGATGGATGCTGGTTTATGCTCAGTTTGCGGCGAAGAAAGTTTCGGAACTGGTTCCGACCACATTCGCGAGAAAGATGGA ATCTGGGCAGTCCTTGCTTGGCTATCCATATTGGCTTACAAGAACAAGGACAATCTCAGTGGTGGAAAGCTTGTGACTGTAGAAGATATAGTCCGTAAAC ATTGGGCTACTTATGGTCGCCACTATTATACTCGATATGATTACGAGAATGTTGATGCAGGTGCAGCAAAAGAACTGATGGCAAATTTGGTCAGCCTCCA ATCAAACCTTGCTGGAGTTAACGAGACTGTGAAGGAGATCCGATCAGATGTCTCCAAGGTCGTCAACGCTGATGAATTCGAGTACAAAGACCCTGTCGAT GGTTCCATCTCAGCACACCAAGGTGTTCGATATTTGTTCGAGGATGGCTCTCGACTGGTTTTCCGCCTTTCAGGAACTGGATCAGTGGGCGCGACCATCC GTCTCTACATCGAACAGTACGAGAAGGATCCATTGAAGATCGGCAGAGAGTCTCAGGACGCACTTTCACCTCTGGTTGAGGTCGCTTTGAAACTGTCCAA AATGCAAGAATACACCGGCCGATCTGCTCCCACCGTCATCACATAG
AA sequence Show only first row Show all	>Lus10003712 pacid=23179484 polypeptide=Lus10003712 locus=Lus10003712.g ID=Lus10003712.BGIv1.0 annot-version=v1.0 MVFKVSTVKSSPIDGQKPGTSGLRKKVKVFMQQHYLENFVQSTFNALTAEKVRGATLVVSGDGRYYSKEAIQVIIKMAAGNGVRRVWVGQNGLLSTPAVS AVIRERVGADGSKATGAFILTASHNPGGPDEDFGIKYNMENGGPAPEGITDKIYENTKTIKEYLTSDVPDVDISATAVTSFTGPEGQFDVDVFDPASDYV KLMKSIFDFESMKKLVTSPNFSFCYDALHGVGGAYAKSIFVEELGAKESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSDVEPPEFGAAADGD ADRNMILGKRFFVTPSDSVAVIAANAVESIPYFSSGLKGVARSMPTSAALDVVAKSLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDG IWAVLAWLSILAYKNKDNLSGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVSLQSNLAGVNETVKEIRSDVSKVVNADEFEYKDPVD GSISAHQGVRYLFEDGSRLVFRLSGTGSVGATIRLYIEQYEKDPLKIGRESQDALSPLVEVALKLSKMQEYTGRSAPTVIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	0	1
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	1.0	0.9423
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	2.4	0.9281
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	3.5	0.9162
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	4.0	0.9314
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	4.5	0.9268
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	5.5	0.9247
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	5.9	0.9143
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	7.3	0.8899
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	7.3	0.9041
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	8.5	0.9066

Compare expression of checked genes

Lus10003712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.