Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14860 211 / 2e-70 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 210 / 1e-69 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G18300 157 / 1e-48 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 154 / 2e-47 ATNUDT21 nudix hydrolase homolog 21 (.1) AT1G12880 115 / 3e-32 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G26690 114 / 6e-32 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT3G12600 98 / 8e-26 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001598 [exp] 286 / 2e-99 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 249 / 3e-85 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 248 / 1e-84 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 120 / 6e-34 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 117 / 3e-33 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 94 / 3e-24 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107300 [exp] 223 / 4e-75 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 216 / 3e-72 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.017G131000 [exp] 183 / 6e-59 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 174 / 2e-55 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.015G035000 [exp] 166 / 2e-51 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.012G044300 [exp] 164 / 2e-51 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.001G029500 [exp] 117 / 2e-33 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.003G194900 [exp] 115 / 1e-32 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 107 / 2e-29 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 106 / 1e-28 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10003713 pacid=23179457 polypeptide=Lus10003713 locus=Lus10003713.g ID=Lus10003713.BGIv1.0 annot-version=v1.0 ATGGCACCGTTTCCAAGAAATATTGAAGACGACGTGTGGGAGATTAAGATCAGCTGCCTACGTAACTTGCCAATGAACACAAAGTGTCCTTCAGTATGCA TTCCTTATAGATATAAGAAGGATGAAGATGGTTCAATTTCTGATGAATTGGAAGTTCTTGTCATCACTTCTCAAAAGGGTGGCTCTGGATTGATGTTCCC TAAGGGTGGTTGGGAGCTTGATGAGTCTGAGCAAGAAGCAGCATCAAGAGAGTCCTTTGAAGAGGCTGGAGTTCTTGGAACTATTGAGGATCAATTGGGG AAATGGAACTTCATGAGCAAGAGCAATGGCATATTCTATGAAGGGTATATGTTCCCTTTGCTAGTCACCGAGCAACTCGATTTCTGGCCCGAGCGACATG TCCGAAAACGGATTTGGTTGAGTGTCGACGATGCGAGAGACACTTGCAGGCACTGGTGGATGAAGGAAGCACTGGACGTGTTAGTATCGCGGCTAAGCTC GTTACAACCGGAACAAAAAGCAGAGGATGACGTGGAAGTAGAACAAGAACCGGAAGAGGAACAAGAACAAGAAGTAGTAACTTGCAGGCTAAGTTAG
AA sequence Show only first row Show all	>Lus10003713 pacid=23179457 polypeptide=Lus10003713 locus=Lus10003713.g ID=Lus10003713.BGIv1.0 annot-version=v1.0 MAPFPRNIEDDVWEIKISCLRNLPMNTKCPSVCIPYRYKKDEDGSISDELEVLVITSQKGGSGLMFPKGGWELDESEQEAASRESFEEAGVLGTIEDQLG KWNFMSKSNGIFYEGYMFPLLVTEQLDFWPERHVRKRIWLSVDDARDTCRHWWMKEALDVLVSRLSSLQPEQKAEDDVEVEQEPEEEQEQEVVTCRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10003713 [exp]	0	1
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	4.0	0.8739
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	9.1	0.8537
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	9.6	0.8400
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	11.2	0.8414
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	12.0	0.8260
AT1G53400			Ubiquitin domain-containing pr...		Lus10007315 [exp]	12.5	0.8228
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	13.2	0.8381
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	14.5	0.8247
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	17.2	0.8383
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	20.2	0.8255

Compare expression of checked genes

Lus10003713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.