Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30110 275 / 5e-96 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT3G10620 193 / 6e-63 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 182 / 1e-58 ATNUDX27 nudix hydrolase homolog 27 (.1) AT5G47650 40 / 0.0003 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 40 / 0.0004 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47240 40 / 0.0005 ATNUDT8 nudix hydrolase homolog 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013459 [exp] 295 / 1e-93 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10018988 [exp] 196 / 8e-64 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10021279 [exp] 182 / 2e-58 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 180 / 2e-57 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10033839 [exp] 179 / 3e-57 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10021278 [exp] 178 / 1e-56 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 172 / 2e-54 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 171 / 4e-54 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 164 / 1e-50 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112000 [exp] 303 / 3e-107 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.008G130100 [exp] 302 / 9e-107 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.008G017900 [exp] 200 / 2e-65 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 199 / 2e-65 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.006G203700 [exp] 187 / 2e-60 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 187 / 3e-60 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.014G168400 [exp] 45 / 1e-05 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 40 / 0.0005 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 39 / 0.0006 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G080400 [exp] 39 / 0.0008 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10003714 pacid=23179463 polypeptide=Lus10003714 locus=Lus10003714.g ID=Lus10003714.BGIv1.0 annot-version=v1.0 ATGGATGGTTTGCCTTCTGGGTATCGCCCAAATGTTGGTGTCTGCCTCATCAACCCTGATGGCCAGGTGTTTGTGGTTTCTAAGCTGAATGTTCCAGGAG CATGGCAAATGCCTCAGGGAAGTATTGAAGAAGATGAGGAGCCAATGACTGCAGTAATCAGGGAGTTGAGGGCAGAAACTGGGATCACGTCTGGAGAAAT CGTTACCGAGGTCCCTAAATGGCTGACTTATGACTTCCCACCTGCTGTCAAGGCCAAAGTGAATCGCCTCTGGGGTGGAGAATGGCACGGCCAAGCTCAA AAATGGTTCCTGATGAGATTAACGAAAGACGAGGACGAGATCAACCTAGAGAACGGGGAGGCAGACTCCGAATTCTCGGAGTGGAAATGGGCTAGCCCTG ACGAAGTTGTCGAGCTGGCGGTGGACTACAAGAGGCCGTTATACGAGGAAGTGATGAAGACATTCAAGCCATACTTGAACGAGAATGGGATTGCTGCGAA GTGTAAATCATCAAAATGGTGA
AA sequence Show only first row Show all	>Lus10003714 pacid=23179463 polypeptide=Lus10003714 locus=Lus10003714.g ID=Lus10003714.BGIv1.0 annot-version=v1.0 MDGLPSGYRPNVGVCLINPDGQVFVVSKLNVPGAWQMPQGSIEEDEEPMTAVIRELRAETGITSGEIVTEVPKWLTYDFPPAVKAKVNRLWGGEWHGQAQ KWFLMRLTKDEDEINLENGEADSEFSEWKWASPDEVVELAVDYKRPLYEEVMKTFKPYLNENGIAAKCKSSKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	1.4	0.9227
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	3.5	0.9193
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	7.9	0.8943
AT3G48660			Protein of unknown function (D...		Lus10037036 [exp]	8.7	0.8926
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	11.0	0.9015
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10015172 [exp]	12.0	0.8711
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	12.5	0.9158
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	14.3	0.9173
					Lus10034460 [exp]	15.6	0.8738
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	15.7	0.9075

Compare expression of checked genes

Lus10003714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.