Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01480 825 / 0 O-fucosyltransferase family protein (.1) AT1G14970 790 / 0 O-fucosyltransferase family protein (.1) AT1G35510 607 / 0 O-fucosyltransferase family protein (.1) AT1G38131 550 / 0 O-fucosyltransferase family protein (.1) AT1G38065 512 / 1e-178 O-fucosyltransferase family protein (.1) AT3G26370 323 / 2e-103 O-fucosyltransferase family protein (.1) AT1G29200 312 / 4e-100 O-fucosyltransferase family protein (.1.2.3) AT4G38390 311 / 3e-99 RHS17 root hair specific 17 (.1) AT4G16650 310 / 2e-98 O-fucosyltransferase family protein (.1) AT4G24530 304 / 9e-97 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013460 [exp] 1027 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 900 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 890 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 610 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 561 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 486 / 1e-168 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 479 / 2e-165 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 336 / 2e-108 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 334 / 7e-108 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130600 [exp] 868 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 865 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 626 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 545 / 0 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 523 / 0 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 334 / 1e-107 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 332 / 3e-107 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 332 / 2e-106 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.010G048500 [exp] 323 / 8e-104 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 323 / 1e-103 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003715 pacid=23179482 polypeptide=Lus10003715 locus=Lus10003715.g ID=Lus10003715.BGIv1.0 annot-version=v1.0 ATGCACGCCTCTAAGCGGATTCCGAGCAGCGGTCACACCTCGCCGTCGCCGCCGCATTCTCCAATCCGTTCTCCTCGGTACAGAGGCAGGTCGAAGCCTG GACGGTTCCCTTCAGCTTCGGCGACGGCTCATCCGCCCGGTCGAAACCTAGCTCATCGGTTAGCTTGGCTTCTCCTCTCTGTTCTCCTCCGTCGCCAGGG GATTTTCCTGTTCGCGCCATTGATGTATATCTCAGGGATGCTTCTATACATGGGGACTGTGTCCTTCGATGTCGTCCCCCAGATTTCTAGCAAGCCTACT CCTGGCTCTGTTTATAAGAGCCCCCTCGTCTACGAGAAGCTCCGCCCTGAGATGGACGCCGATAATTCTTCTGCCGATGCGCTATTAACTATATGGAAAA ATTCATACAAAAGTGGCGAGTGGAAACCATGCGTGAAGAGGTATTTGGAAGGCATGCCGACTTCTAATGGCTACATATATGTGGAGGCTAATGGTGGTTT GAATCAACAAAGGACATCGATATGTGATGCAGTTGCAATTGCTGGCCTCCTGAATGCAACACTTGTGATCCCTAATTTCCATTATCATAGCATCTGGAAA GATCCCAGCAAATTCAAAGACATTTATGACGAAGACTTTTTCATCAGTGCCTTACAAAATGAAGTGAGGGTAGTTGATAAGGTTCCGGGATATCTTATGG AACGGTTTGATCACAACTTCACCAATGTATTCAACTTCAGAGTAAAGGCATGGTCACCTATCGAATATTACAAAGATGTTGTCCTCCCCAGGCTACTAGA AGAAAAGGTTGTAAGGATTTCTCCATTTGCACACCGGTTGTCATTTGATGCTCCAACAGATGTCCAGCGCCTTAGATGTATGGCAAATTATGTAGCTCTA AGGTTCTCAAACCCCATATCAACATTGAGTGACAATTTAGTGGCTAGAATGAAAGATTTGAGTGCAAGCCAAGGTGGGAAATATGTTTCTGTGCATCTTC GCTTTGAGGAGGACATGGTTGCTTTCTCTTGTTGTGTATTTGACGGCGGTGCGAAAGAAGATAGAGACATGAAAGCTGCTAGGGAAAGAGGCTGGAGAGG GAAATTTACGAAGCCTGGCCGAACCATACTTCCCGGAGCAATCAGGCTTAATGGCAAGTGCCCCCTCTCTCCACTAGAGGTTGGTTTGATGCTCAGGGGA ATGGGTTTCGGCAAGGACACGTACATATATTTAGCTTCTGGAAAGATATACAATGCTGAGAAGTACATGGCTCCCCTGTTAGAAATGTTTCCAAATTTGC AGACGAAAGATACACTGGCGACTGCCGAAGAACTTGCTCCATTTAAGAATTTCTCTTCCAGGATGGCGGCGATAGACTATACCGTCTGTCTACACAGTGA AGTATTCGTCACAACTCAAGGCGGAAACTTCCCTCATTTCCTGTTAGGCCACCGGAGATTCTTGTACGGTGGACATGCCAAAACAATTAAACCAGACAAG CGGAAGCTAGCATTGATGCTTGATAATACATCTTTAGGGTGGAAGAACTTCAAACGGCAGATGTCGAGCATGAGGTCTCACAGCGATGCCAAGGGGTTCG AACTGAAAAGAACGAACGACTCGGTATTCTCCCATCCATGCCCACATTGCATGTGCCAGATCAACAAAGCAGAAGCCTCGCCAAAACTATCATCATGA
AA sequence Show only first row Show all	>Lus10003715 pacid=23179482 polypeptide=Lus10003715 locus=Lus10003715.g ID=Lus10003715.BGIv1.0 annot-version=v1.0 MHASKRIPSSGHTSPSPPHSPIRSPRYRGRSKPGRFPSASATAHPPGRNLAHRLAWLLLSVLLRRQGIFLFAPLMYISGMLLYMGTVSFDVVPQISSKPT PGSVYKSPLVYEKLRPEMDADNSSADALLTIWKNSYKSGEWKPCVKRYLEGMPTSNGYIYVEANGGLNQQRTSICDAVAIAGLLNATLVIPNFHYHSIWK DPSKFKDIYDEDFFISALQNEVRVVDKVPGYLMERFDHNFTNVFNFRVKAWSPIEYYKDVVLPRLLEEKVVRISPFAHRLSFDAPTDVQRLRCMANYVAL RFSNPISTLSDNLVARMKDLSASQGGKYVSVHLRFEEDMVAFSCCVFDGGAKEDRDMKAARERGWRGKFTKPGRTILPGAIRLNGKCPLSPLEVGLMLRG MGFGKDTYIYLASGKIYNAEKYMAPLLEMFPNLQTKDTLATAEELAPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRFLYGGHAKTIKPDK RKLALMLDNTSLGWKNFKRQMSSMRSHSDAKGFELKRTNDSVFSHPCPHCMCQINKAEASPKLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	0	1
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	3.0	0.8556
AT1G35780			unknown protein		Lus10033456 [exp]	6.0	0.7981
AT2G01480			O-fucosyltransferase family pr...		Lus10013460 [exp]	6.6	0.7389
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10016686 [exp]	8.1	0.7240
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	12.3	0.8398
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	13.2	0.8101
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	15.0	0.7919
AT4G24630			DHHC-type zinc finger family p...		Lus10028737 [exp]	15.4	0.7678
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	16.6	0.7758
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	18.9	0.7602

Compare expression of checked genes

Lus10003715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.