Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 457 / 7e-162 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 417 / 8e-146 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75880 408 / 3e-142 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G75890 405 / 2e-141 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 398 / 1e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 392 / 2e-136 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 392 / 2e-136 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 376 / 4e-130 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G59030 370 / 3e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 370 / 4e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034540 [exp] 679 / 0 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 503 / 3e-180 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 424 / 4e-149 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 400 / 2e-139 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 400 / 2e-139 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003719 [exp] 394 / 6e-137 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10013573 [exp] 390 / 2e-135 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 357 / 2e-122 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034542 [exp] 353 / 8e-121 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 493 / 2e-175 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 486 / 5e-173 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 298 / 4e-99 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 297 / 5e-99 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 296 / 1e-98 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 290 / 4e-96 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 288 / 6e-95 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 280 / 3e-92 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 280 / 4e-92 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.001G191400 [exp] 276 / 6e-91 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003717 pacid=23158684 polypeptide=Lus10003717 locus=Lus10003717.g ID=Lus10003717.BGIv1.0 annot-version=v1.0 ATGACGACGACAATAGCAGTAGCTCTTGTGTTTCTGTGCTTTATTAGTACTTGTAATGCTGCTGCTGCTGCTGCGAGGGTGAAGTTGCCGGCGAACATCT CCGTTCCGGCAATTATCATATTCGGTGACTCAATCATGGACACGGGAAACAACAACAACCTTCCCACAGCTATAAAATGCAACTTCCCTCCCTACGGTGT TGATTTCAGCGGCGGCAATCCCACTGGCAGGTTTTGCGACGGCAAAATTCCTTCCGATATCATCGCTGAAGCTTTGGGAATCAAAAGCAGTGTTCCAGCA TACTTGGACCCAAGTCTACAGCCCAATGACTTGCTAACAGGAGTCTCATTTGCTTCCGGAGGTGCTGGATTCGATCCTCTTACCGCCAAAATAGTGTCTG TTGTGACATTGAGCCAACAACTCCAATACTTCCAAGAGTACGTTTCCAAGGTGAAAGCCATGGTTGGAGAAGAGAGGACCAATTTCATCATATCCAATGC CATATTTTTCGTAGTTGCCGGTAGCGACGACATAGCCAACACTTACTTCCTCCTTCGAGCAAGGAGTCAGTACGACGTTCCCTCTTACACTGACCTCATG TCTGATTCCGCATCTAACTTTGTTCAGGAAATATATAAACTTGGGGCAAGAAGAATTGGGGTGTTTAGTGCGCCGCCAATTGGGTGCGTGCCATCACAGA GGACAATAGGAGGAGGACTGGATAGAGAATGCGCTGAAGACAGAAACCAAGCAGCCATTCTTTTCAACTCTAAGCTTCAATCAAAGTTGGCTTCTCTTGA TCAATCTTTACCCAATTCTAACGTTGTCTACATTGATGTCTACACTTCCCTGCTTAACCTCATTCACACCCCACAAAAATACGGTTTCGAAGTGGCGGAG AAGGGCTGTTGTGGAACCGGAGCAATCGAGGTGGCTGTGTTGTGTAACAAACTGACGCCGGTGACATGTCCCAACATTGCATCACATATATTTTGGGATA GCTACCATCCTACTGAGAAGGCTTACAGGGTTATAACTACTCAGCTACTTGATCGATACACCACTGCTTTGCTTTCATAG
AA sequence Show only first row Show all	>Lus10003717 pacid=23158684 polypeptide=Lus10003717 locus=Lus10003717.g ID=Lus10003717.BGIv1.0 annot-version=v1.0 MTTTIAVALVFLCFISTCNAAAAAARVKLPANISVPAIIIFGDSIMDTGNNNNLPTAIKCNFPPYGVDFSGGNPTGRFCDGKIPSDIIAEALGIKSSVPA YLDPSLQPNDLLTGVSFASGGAGFDPLTAKIVSVVTLSQQLQYFQEYVSKVKAMVGEERTNFIISNAIFFVVAGSDDIANTYFLLRARSQYDVPSYTDLM SDSASNFVQEIYKLGARRIGVFSAPPIGCVPSQRTIGGGLDRECAEDRNQAAILFNSKLQSKLASLDQSLPNSNVVYIDVYTSLLNLIHTPQKYGFEVAE KGCCGTGAIEVAVLCNKLTPVTCPNIASHIFWDSYHPTEKAYRVITTQLLDRYTTALLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	0	1
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	1.0	0.9866
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	1.4	0.9776
AT3G59090			unknown protein		Lus10040880 [exp]	2.8	0.9724
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	3.0	0.9772
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	4.2	0.9667
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	6.5	0.9651
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009628 [exp]	6.9	0.9594
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	6.9	0.9550
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009486 [exp]	7.1	0.9555
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	8.8	0.9450

Compare expression of checked genes

Lus10003717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.