Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75880 375 / 5e-129 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G42170 367 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 362 / 2e-124 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G14820 360 / 1e-123 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 358 / 8e-123 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 342 / 1e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 342 / 1e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 330 / 4e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 322 / 2e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 324 / 5e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034541 [exp] 693 / 0 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 562 / 0 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 551 / 0 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 395 / 5e-137 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 394 / 6e-137 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 379 / 6e-131 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 321 / 4e-108 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034542 [exp] 306 / 2e-102 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017278 [exp] 305 / 4e-102 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 412 / 5e-144 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 405 / 1e-140 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 277 / 4e-91 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 277 / 7e-91 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 273 / 3e-89 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 267 / 1e-86 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 265 / 3e-86 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 253 / 1e-81 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 252 / 3e-81 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 250 / 3e-80 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003719 pacid=23158687 polypeptide=Lus10003719 locus=Lus10003719.g ID=Lus10003719.BGIv1.0 annot-version=v1.0 ATGGACAGAGCAATGATGTTGCCTTATTCATCATCAAATCTATTCTTCTCGTTCACGATTCTTTCTTTCCTTCTTTTCGCCGCCGGTCCACCATCTACTT TGGCACTGATAAAACTTCCCGCCGGCGAAGTTGTACCTGCTGTTTTAGTGTTCGGAGATTCCATCGTCGACACAGGAAACAACAACGACCTGAATTCTCC TGCCAGGAGCAACTTCCCTCCGTACGGCAGGGATTTCAACGGCGGAGTCCCCACCGGAAGATTCTCTAACGGCAAAGTTCCTTCCGATTTCCTAGTTGAA GAGCTTGGTATCAAAGACACTCTGCCGGCGTACAAGGATCCGAAGTTGAAGCCAGAGGATCTTGTTACGGGCGTTTGCTTCGCTTCCGGCGGTGTTGGTT ACGATGACTTGTCTTCCCAAACTGCGTCGGTTCCGCCATTGAGCGAACAATTAAGGGAGTTTAAAGAGTACGTGAACAGAGTCAAAGTGATGATCGGAGA AGAAGGAACGACCAAGTTGTTGACAAATAGCTTAGTTATAATAGTTCTTAGCAGCAACGACATAGCCAACACTTATTTCAATGCTCACTTGAGAGAGGTC CAGTACGACTTCCCTACCTATGCTGACATCCTCGTCAAAACTGCATCAACATTTGTTATGGATCTGTATACAATAGGGTGCCGGAGGATCGGGGTTTTTG GAGCGCCGCCGCTAGGGTGTATTCCGTCTAGCAGGACGGTAGCAGGTGGGATCGAGAGAAAGTGCAACGAAAAGTATAATCAAGCGTCGCAATTGTTCAA CACCAAGTTAGCAGTGGCATTGAATGCCATGAAGGCAAACTTGGACACTTATACTAGACTCGTCTACATTGACATCTACAGTCCTTTATTAGATCTCATC ATAAACTATCGATCATACGGGTTCGAGATAGCGAACAAAGGATGTTGCGGGACGGGTAAGCTAGAGGCATCGGTACTATGCAACAAATACAACCCGTTTA CTTGTGCAGACGACTCCAAGTATTTGTTCTGGGATGGCTACCATCCATCGGAGAAGACTTACAGAATTTTGGTCAACCAGCTTCTGACCAAGTACGTTGA TAGCTTCATGTAG
AA sequence Show only first row Show all	>Lus10003719 pacid=23158687 polypeptide=Lus10003719 locus=Lus10003719.g ID=Lus10003719.BGIv1.0 annot-version=v1.0 MDRAMMLPYSSSNLFFSFTILSFLLFAAGPPSTLALIKLPAGEVVPAVLVFGDSIVDTGNNNDLNSPARSNFPPYGRDFNGGVPTGRFSNGKVPSDFLVE ELGIKDTLPAYKDPKLKPEDLVTGVCFASGGVGYDDLSSQTASVPPLSEQLREFKEYVNRVKVMIGEEGTTKLLTNSLVIIVLSSNDIANTYFNAHLREV QYDFPTYADILVKTASTFVMDLYTIGCRRIGVFGAPPLGCIPSSRTVAGGIERKCNEKYNQASQLFNTKLAVALNAMKANLDTYTRLVYIDIYSPLLDLI INYRSYGFEIANKGCCGTGKLEASVLCNKYNPFTCADDSKYLFWDGYHPSEKTYRILVNQLLTKYVDSFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10003719 [exp]	0	1
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10000898 [exp]	1.0	0.9604
					Lus10020978 [exp]	2.8	0.9563
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	2.8	0.9342
					Lus10007554 [exp]	3.9	0.9407
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	5.0	0.9340
AT2G42760			unknown protein		Lus10019924 [exp]	5.5	0.9056
					Lus10018648 [exp]	6.0	0.8976
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	8.8	0.8996
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	9.2	0.8868
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	9.5	0.9189

Compare expression of checked genes

Lus10003719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.