Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 335 / 5e-114 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 333 / 5e-113 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 317 / 4e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 302 / 8e-101 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 294 / 7e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 294 / 7e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 292 / 5e-97 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G20132 292 / 1e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 291 / 5e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G73610 285 / 1e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034542 [exp] 637 / 0 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 593 / 0 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003723 [exp] 371 / 3e-128 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003722 [exp] 366 / 2e-126 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003717 [exp] 357 / 3e-122 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 351 / 3e-120 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 343 / 2e-117 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 330 / 8e-112 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 326 / 2e-110 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 348 / 9e-119 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 345 / 2e-117 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 258 / 1e-83 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 256 / 5e-83 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G061900 [exp] 254 / 3e-82 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191400 [exp] 253 / 4e-82 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 253 / 7e-82 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G062000 [exp] 253 / 1e-81 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 251 / 4e-81 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 251 / 1e-80 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003720 pacid=23158691 polypeptide=Lus10003720 locus=Lus10003720.g ID=Lus10003720.BGIv1.0 annot-version=v1.0 ATGGCTTGCATGTGGTCTTCACGCATTCTAGTACCATTACTACTGCTGGATGCTCTGTTTTTCGGGTCGTCGGTCAGTGAAGTTCCGGCGATTTTCGTGT TTGGCGACTCCATTCTTGACACCGGAAACAACAATTACTTTACGACTTGGAGCAAGTGTAACTTTCCGCCGTACGGAAGGAATTTTTTGGGCGCAAAACC CACCGGGAGGTTTTCCGATGGGAAAATCATATCGGACCTCTTAGTTGAAAGTTTAGGAATCAAAAATCTTTTACCGCCTTATCTTGATCCGAATATTGGA GCTAAAGATCTCCTAACAGGAGTAGCTTTCGCTTCTGGTGGTTGCGGCTTTGATCTTGAGACATCCAAATTGACGATGGCCTTATCGATTCCCGATCAAC TCAAACTCTTCCAAGAATACAAGGAGAAAGTACGAGGACTTGTCGGAAATAACGAAACAAACAAGATTGTGAATGATAGCCTCTATCTAATATCATCGGG CAACAATGACATTGGACTCACCTATTTCCTAAGCAACAGACGGCTTCAGTATGATATTGATACATACGCTACATTTCTTGTGACGCAAGCATCTGAATCT TTCAATGAGTTATACAAGTTGGGGGCTCGTAAGATTGGTGTGTTTAGCACATTAGTATCAGGGTGTGTGCCTGAAGCAAGAACCCTTGCAGGAGGGAAGC AAAGACAGTGTGCTGAGAATTTCAATGAATTAGCAAAGTTATACAACAAGAAGCTGATCTACGAGATAGATTACTTGGGGAAAAAACTTCCCGATGCCAA ATTAGTGTTTGTGGATCTGTTTACCCCTTTGCTTAACATTATAGAAGATCCTTCAAAATATGGCTTTGTTGTAGAGAAAGATGGGTGCTGCGATACTGGG AAATTAGAGGCTGCAGTTCTTTGCAACGAAGTAATGAGCCCTCTAACCTGTACCAATACTTCACAGTATATGTTTTGGGATAGTGTTCATCCCACAGAAA AAACTTACAAAATCTTGGTGTCGCAGATTAAGGAATACATAGATAAGCTGCTTCTCTGA
AA sequence Show only first row Show all	>Lus10003720 pacid=23158691 polypeptide=Lus10003720 locus=Lus10003720.g ID=Lus10003720.BGIv1.0 annot-version=v1.0 MACMWSSRILVPLLLLDALFFGSSVSEVPAIFVFGDSILDTGNNNYFTTWSKCNFPPYGRNFLGAKPTGRFSDGKIISDLLVESLGIKNLLPPYLDPNIG AKDLLTGVAFASGGCGFDLETSKLTMALSIPDQLKLFQEYKEKVRGLVGNNETNKIVNDSLYLISSGNNDIGLTYFLSNRRLQYDIDTYATFLVTQASES FNELYKLGARKIGVFSTLVSGCVPEARTLAGGKQRQCAENFNELAKLYNKKLIYEIDYLGKKLPDAKLVFVDLFTPLLNIIEDPSKYGFVVEKDGCCDTG KLEAAVLCNEVMSPLTCTNTSQYMFWDSVHPTEKTYKILVSQIKEYIDKLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42170			SGNH hydrolase-type esterase s...		Lus10003720 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10028914 [exp]	4.9	0.8279
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	5.4	0.8445
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	5.8	0.7640
					Lus10030066 [exp]	10.0	0.7332
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	15.9	0.7875
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10009187 [exp]	20.9	0.8358
					Lus10011620 [exp]	21.6	0.7055
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	24.2	0.8251
AT5G16970		AT-AER	alkenal reductase (.1)		Lus10035274 [exp]	29.8	0.8082
AT4G24130			Protein of unknown function, D...		Lus10001674 [exp]	30.3	0.8072

Compare expression of checked genes

Lus10003720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.