Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14820 292 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 289 / 5e-96 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 288 / 1e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 288 / 1e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 282 / 3e-93 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 278 / 1e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 279 / 2e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 276 / 3e-91 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G75880 276 / 6e-91 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003723 [exp] 609 / 0 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003720 [exp] 366 / 3e-126 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10034542 [exp] 357 / 9e-123 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026074 [exp] 351 / 3e-120 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 310 / 4e-104 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 310 / 4e-104 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 304 / 4e-102 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 301 / 6e-101 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 295 / 2e-98 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 307 / 3e-103 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 307 / 9e-103 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 256 / 2e-83 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.001G191400 [exp] 256 / 4e-83 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 251 / 4e-81 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 249 / 1e-80 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 249 / 3e-80 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 245 / 2e-78 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076600 [exp] 240 / 4e-77 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 236 / 2e-75 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003722 pacid=23158686 polypeptide=Lus10003722 locus=Lus10003722.g ID=Lus10003722.BGIv1.0 annot-version=v1.0 ATGTTGAACGTTACTACTACTACTACAGGCAGTAAAAATGTTACAGCAGTGTTTGCCTTTGGTGACTCGGGTCTAGACACGGGCAACAACAATTATGTAA ATACCACTTGGGTTAAGTGCAACTTCCCTCCTTACGGCACAGATTTCCGTCGAGGAGGAAAACCCACTGGCCGCTGTTCTAATGGAAAACTCCCTTCTGA CTTAATAGCTGAAGATTTAGGGGTTAAAGAATATTTACCGCCTTACCTTGACCCCAATCTCCAAGCTGAAGATTTAGTAACGGGTGTGTGTTTTGCTTCT GCCGGCAGTGGCCATGACCCTCAAACATTAAAGATTACGTCAGCAATCTCGGTCCCAGATCAACTGAAACTATTCAAACAATACATTGCGAGGTTGAGGG GCTTGGTAGGGGAGCAAAGATCGATAGAAATCGTGAAGAAAAGTCTTTATCTAATATCATCCGCCAACAATGATATTGGAATTACCTATCCACTAATAAA ACACACAAAGTACGGCATGGCTTTGTATGCTTCGTTTCTTGTTACCCAAGTCACTGCAACTTTGAAGCAGCTATACGAATTGGGAGCTCGTAAAATCGTG GTCCTAAGCCCAACAGTGGTTGGATGTGTGCCGGCAATAAGAACAATATTTGGGGGCACAAAGCGAAGTTGTGTAGAAAGTTATAATAAGCTAGTCAGAT TATACAACAAGAAGCTGAGCTCTGAGATCGGCAAATTGAACACCAATCTTTACGGTGCCAAGATAGCATTCATCGATATCTTCACCCCTATTTTAGATAT CATTCATAATCCTGATGAAAACGGATTTGTTAATGTGGATGAAGGGTGTTGTGGAACAGGGTTGATCGAGACGGTTATACTTTGCAATAAGCTGAGCCCG TTTACATGTAATAATACTTTAGAGTTTGTCTTTTGGGATAGTGTCCATCTCACTGAGAGGGTTTATCGACTTTTAATGGAACGCGTTGGTATTCAAGATT TCATTCACATGACACATTAA
AA sequence Show only first row Show all	>Lus10003722 pacid=23158686 polypeptide=Lus10003722 locus=Lus10003722.g ID=Lus10003722.BGIv1.0 annot-version=v1.0 MLNVTTTTTGSKNVTAVFAFGDSGLDTGNNNYVNTTWVKCNFPPYGTDFRRGGKPTGRCSNGKLPSDLIAEDLGVKEYLPPYLDPNLQAEDLVTGVCFAS AGSGHDPQTLKITSAISVPDQLKLFKQYIARLRGLVGEQRSIEIVKKSLYLISSANNDIGITYPLIKHTKYGMALYASFLVTQVTATLKQLYELGARKIV VLSPTVVGCVPAIRTIFGGTKRSCVESYNKLVRLYNKKLSSEIGKLNTNLYGAKIAFIDIFTPILDIIHNPDENGFVNVDEGCCGTGLIETVILCNKLSP FTCNNTLEFVFWDSVHLTERVYRLLMERVGIQDFIHMTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42170			SGNH hydrolase-type esterase s...		Lus10003722 [exp]	0	1

Compare expression of checked genes

Lus10003722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.