Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70530 43 / 2e-05 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT4G23190 41 / 0.0001 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G05200 41 / 0.0001 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT5G48540 40 / 0.0003 receptor-like protein kinase-related family protein (.1) AT1G19090 39 / 0.001 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028018 [exp] 111 / 5e-32 ND 39 / 5e-04 Lus10028019 [exp] 105 / 6e-30 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10012369 [exp] 103 / 3e-29 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10015472 [exp] 98 / 6e-27 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10028017 [exp] 74 / 5e-16 AT1G03250 316 / 1e-106 unknown protein Lus10033450 [exp] 56 / 1e-10 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10020927 [exp] 54 / 1e-09 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10011894 [exp] 49 / 5e-08 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10034546 [exp] 49 / 8e-08 AT3G22060 43 / 1e-05 Receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 51 / 1e-08 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G024900 [exp] 46 / 2e-06 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 46 / 2e-06 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.010G043900 [exp] 46 / 3e-06 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.004G024404 [exp] 44 / 9e-06 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 43 / 3e-05 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 43 / 3e-05 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030650 [exp] 42 / 7e-05 AT4G05200 476 / 1e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024500 [exp] 41 / 0.0001 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025001 [exp] 41 / 0.0001 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003724 pacid=23169637 polypeptide=Lus10003724 locus=Lus10003724.g ID=Lus10003724.BGIv1.0 annot-version=v1.0 ATGGCATCATCGAAAGCAGTAGTAGTACCACTACTCCAGCTCGCAATGGTCATGATGATCATCGGAGTACTCAAGCAGCAGACGAGATTTGTCGGGGGGA GCGAGTTATTGGACGTGAACAATGCATGGGCAGCATGCAACGGGCTAGAGTTTCGAGCACACGACGAAAAGAGAATCCTGGCAGCTGCGATGCTGCAAGA ACTGGTAGATAGTAACTGGCCTTTCCAGGAAGTTCAAGCTATGAAAACATGTCGCCCGAAGAGGCACCCTTTGTTATACGCCTACGCCAATTGCACCGTT GATTCGTACCTCCGCGACTGTCAGAATTGTGTGAAGTCGGCCAAAGTTTATCTGCTTCGAAGTTGTCCCCACCGGCGTGGTGCACGGGTGATGCTTTGGG ACATTTGTTACATGAGGTACGAGGAGTATGACTTCTGA
AA sequence Show only first row Show all	>Lus10003724 pacid=23169637 polypeptide=Lus10003724 locus=Lus10003724.g ID=Lus10003724.BGIv1.0 annot-version=v1.0 MASSKAVVVPLLQLAMVMMIIGVLKQQTRFVGGSELLDVNNAWAACNGLEFRAHDEKRILAAAMLQELVDSNWPFQEVQAMKTCRPKRHPLLYAYANCTV DSYLRDCQNCVKSAKVYLLRSCPHRRGARVMLWDICYMRYEEYDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003724 [exp]	0	1
					Lus10008379 [exp]	1.7	0.8899
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	13.7	0.8686
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	19.3	0.8621
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	19.5	0.8579
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	23.2	0.8599
					Lus10020401 [exp]	24.9	0.8565
					Lus10030151 [exp]	27.6	0.8308
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	29.3	0.8552
					Lus10042963 [exp]	31.1	0.8446
AT3G19970			alpha/beta-Hydrolases superfam...		Lus10010171 [exp]	32.4	0.8167

Compare expression of checked genes

Lus10003724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.