Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02860 374 / 4e-131 Phenazine biosynthesis PhzC/PhzF protein (.1) AT1G03210 356 / 3e-124 Phenazine biosynthesis PhzC/PhzF protein (.1) AT4G02850 338 / 6e-117 phenazine biosynthesis PhzC/PhzF family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175701 [exp] 444 / 4e-159 AT4G02860 363 / 2e-126 Phenazine biosynthesis PhzC/PhzF protein (.1) Potri.010G175700 [exp] 438 / 2e-156 AT4G02860 366 / 9e-128 Phenazine biosynthesis PhzC/PhzF protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0288 [flax] [poplar] DAP_epimerase PF02567 [flax] [poplar] PhzC-PhzF Phenazine biosynthesis-like protein
Representative CDS sequence Show only first row Show all	>Lus10003725 pacid=23169633 polypeptide=Lus10003725 locus=Lus10003725.g ID=Lus10003725.BGIv1.0 annot-version=v1.0 ATGGAGAAAGGAAAGCAGCTAGTTGACTATTTCGTGGTTGATGCTTTCACCGACTCTCCATTCAAGGGCAATCCGGCCGCCGTGTGCTTGCTGGAAGACG AAAGAGACGAGTCATGGCTGCAATCTCTAGCGGCAGAGTTCAACATCTCCGAGACCTGCTACTTAACTCCCGTAACTCCTTCCACTAACCCCAGGTTCCG TCTCAGGTGGTTCACTCCTGTTGCTGAGGTTAAGCTCTGTGGGCACGCCACTTTGGCAGCCTCCCACACCTTGTTCTCCAATGGATTGGTGTCCTCTGAT TTGGTCGAGTTCGAAACTCTCTCTGGGATTCTGACTGCTAAAAGAGTTCCAAATGAAAACGGGGAAGCCAAAGACAGCAACTTCCTTATTGAATTGAATT TCCCTGTTGTGCCAACTACTGAGTTCAGCTCTGTGGCTGACAACGACATTGCTCCAATCTCCAAGGCCTTGAATGGTGCCTCGATTGTGGATATCAGACG CACTACCACGGCTGATGACATCTTTGTGGTGCTGCCTTCTGGTGAAGCTGTGTTGGAATTGGAGCCAAATTTTGGCGAGATAATAAAGTGTCCTGGAAGA GGGATCATTGTTTCCGGTGCAGCACCGTCGGGGTCTGGATTCGATTTCTATAGTCGATTCTTCTGCCCCAAGTATGGGATCAATGAGGATCCAGTCTGTG GCAGTGCACATTGTGCTCTAGCACCCTACTGGAGCAAAAAGCTACAGAAATCCGAGTTCTCAGCATACGCGGCGTCTCCAAGGAGTGGAGCATTGAACAT TCAACTCGACGAGCACAACGGGAGAGTGATGCTACGTGGTAAAGCTGTCACTGTTATGCGTGGCTCTGTTCTTGTTTAG
AA sequence Show only first row Show all	>Lus10003725 pacid=23169633 polypeptide=Lus10003725 locus=Lus10003725.g ID=Lus10003725.BGIv1.0 annot-version=v1.0 MEKGKQLVDYFVVDAFTDSPFKGNPAAVCLLEDERDESWLQSLAAEFNISETCYLTPVTPSTNPRFRLRWFTPVAEVKLCGHATLAASHTLFSNGLVSSD LVEFETLSGILTAKRVPNENGEAKDSNFLIELNFPVVPTTEFSSVADNDIAPISKALNGASIVDIRRTTTADDIFVVLPSGEAVLELEPNFGEIIKCPGR GIIVSGAAPSGSGFDFYSRFFCPKYGINEDPVCGSAHCALAPYWSKKLQKSEFSAYAASPRSGALNIQLDEHNGRVMLRGKAVTVMRGSVLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	0	1
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	3.0	0.9076
AT5G54850			unknown protein		Lus10043054 [exp]	4.1	0.8890
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	4.1	0.9236
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	6.5	0.9123
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	6.7	0.8995
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	7.2	0.9063
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	11.2	0.8882
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	11.5	0.9028
					Lus10001241 [exp]	12.4	0.8982
AT2G45320			unknown protein		Lus10000786 [exp]	13.9	0.8973

Compare expression of checked genes

Lus10003725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.