Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25010 54 / 6e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 54 / 8e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 49 / 2e-07 hydrolases;protein serine/threonine phosphatases (.1) AT1G17930 49 / 3e-07 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 42 / 6e-05 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000607 [exp] 211 / 1e-69 AT2G25010 47 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033204 [exp] 199 / 6e-65 AT2G25010 50 / 4e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10000720 [exp] 194 / 1e-64 AT1G17930 56 / 1e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005722 [exp] 189 / 5e-62 ND / Lus10033216 [exp] 194 / 2e-61 AT1G48120 41 / 0.002 hydrolases;protein serine/threonine phosphatases (.1) Lus10036654 [exp] 171 / 6e-56 AT1G50750 44 / 6e-06 Plant mobile domain protein family (.1) Lus10003026 [exp] 150 / 1e-45 AT2G25010 45 / 4e-05 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020617 [exp] 123 / 3e-36 AT2G04865 40 / 3e-04 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033921 [exp] 120 / 8e-36 ND 39 / 5e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10003728 pacid=23169646 polypeptide=Lus10003728 locus=Lus10003728.g ID=Lus10003728.BGIv1.0 annot-version=v1.0 ATGTTCGTATTGGGGTTCTCGAGGGGTTGCAGTTGGGATGCTGCTACACTAGCTTTCCTGTACATGAAGCTCGGGATTGCTTCTCGTGTGGGATCTACGT CCCTGTCATGCTACCTTACTCTGTTGCAGTCGTGGATCTACGTGTACTTCTCGAGTTTGCGTTGTAGGCAGACCCCGATCCCACGTGCTAGTGGGGAGGC ACTTAGTAGTAGGTGGGACGGACCGAGGATCGTTGAGAGAGCAGCTGATGCGGATTTGAGGGTAGACACACTACGATCCGTTCTGGATGGGATGACGAAC ACCCATGTCGATTGGCTTCCGTTTGGTACACCTTACTTCGACGGTGAGGCTCGGTGGCCCATGTATAGTGGAGGCATACATGCGTTCGACTACGTTGAGC CCCACGATCCCAGCTGTGTTTTGCGTCAGTACGGCTACCGACAGACGATCCCAGATTCAATTCTCACGCCGGAGTTAGCTTCTTGA
AA sequence Show only first row Show all	>Lus10003728 pacid=23169646 polypeptide=Lus10003728 locus=Lus10003728.g ID=Lus10003728.BGIv1.0 annot-version=v1.0 MFVLGFSRGCSWDAATLAFLYMKLGIASRVGSTSLSCYLTLLQSWIYVYFSSLRCRQTPIPRASGEALSSRWDGPRIVERAADADLRVDTLRSVLDGMTN THVDWLPFGTPYFDGEARWPMYSGGIHAFDYVEPHDPSCVLRQYGYRQTIPDSILTPELAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	1.0	0.9438
AT5G41720			unknown protein		Lus10006473 [exp]	4.9	0.8642
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	5.1	0.9175
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	5.3	0.8887
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	6.3	0.8836
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	13.4	0.7890
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10011983 [exp]	15.0	0.8452
					Lus10036058 [exp]	15.3	0.8011
AT3G57440			unknown protein		Lus10042062 [exp]	16.2	0.8916
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	18.1	0.8634

Compare expression of checked genes

Lus10003728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.