Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27310 152 / 4e-43 F-box family protein (.1) AT2G36090 112 / 3e-28 F-box family protein (.1) AT3G44326 107 / 7e-26 F-box family protein (.1) AT4G24210 47 / 2e-06 SLY1 SLEEPY1, F-box family protein (.1) AT5G48170 46 / 7e-06 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028024 [exp] 724 / 0 AT2G27310 158 / 4e-45 F-box family protein (.1) Lus10021330 [exp] 128 / 1e-33 AT2G36090 266 / 2e-87 F-box family protein (.1) Lus10017006 [exp] 123 / 9e-32 AT2G36090 255 / 4e-83 F-box family protein (.1) Lus10013309 [exp] 102 / 3e-24 AT2G27310 247 / 4e-80 F-box family protein (.1) Lus10042637 [exp] 46 / 8e-06 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1) Lus10001172 [exp] 45 / 2e-05 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001745 [exp] 41 / 0.0006 AT5G48170 114 / 1e-32 SNEEZY, SLEEPY2, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054500 [exp] 597 / 0 AT2G27310 122 / 2e-31 F-box family protein (.1) Potri.005G208200 [exp] 591 / 0 AT2G27310 130 / 3e-34 F-box family protein (.1) Potri.001G452000 [exp] 176 / 1e-51 AT2G36090 115 / 2e-29 F-box family protein (.1) Potri.004G199300 [exp] 161 / 3e-46 AT2G27310 248 / 3e-80 F-box family protein (.1) Potri.009G160700 [exp] 150 / 4e-42 AT2G27310 221 / 9e-70 F-box family protein (.1) Potri.006G208400 [exp] 122 / 1e-31 AT2G36090 275 / 7e-91 F-box family protein (.1) Potri.014G165700 [exp] 52 / 5e-08 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G122300 [exp] 45 / 3e-05 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 44 / 3e-05 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003731 pacid=23169639 polypeptide=Lus10003731 locus=Lus10003731.g ID=Lus10003731.BGIv1.0 annot-version=v1.0 ATGACCTTTCCGGTAACACAAGTCGACAGTGTGTCCTCGTTAAGCTGCGACATCTTCTACGACATACTAAAACGACTTGATGGCTCGACCTTAGCCACTG CAGCATGTACATGTGCCGCATTCTGTTCCATCTCGAAAGAGGAGAGGTTATGGGAAAACGTTTGCTCTTCTATGTGGCCTTCGACTGATAGAGAAGACGT AAAAGCTCTAATCTCATCGCTCGGAGGATTTCGGAAGTTCTACGCAGATTGTTTCCCTCTGATCGTCAACAAGGAGTTCTCCGAGTATCAGTGGCGTGAG TATCTTCATTATCCAGAAGAGTGGGCCGAGGCAGAATACTACGGTGATTTAGAAGAATACGAGAGCGTATCGCCGTCGGATTTCGTTTCCATAGTCGATA TCCGGTACAAAGATCGAACGGTATGTTCGAAAGTCCTGTGGGGGATTCCAAATGCCAATGGATTCAACGGTTGGTTCCACAACTGCCCCTTTCGAATCGA TCTACTCAGCGACAGTACTGAAGGCGAAGTTTTCCTTTCAGTGAACGATGGCCTGCCGGAAATTACATCCATGGAGAAAGAAAGAAAAGACGGGAAGCTA TGGAAGGAGCTTCGAGACGGACTTCGACTCAGTTGGATAGTCGTGAACACGAAAAACAACCAGGCTGCAAATCTGGCGAGCTGGAGTCCGCTCGGGGGAC AAAGGCACTGGCCAACCGATAAGGATTTCGTGATCAGATTCGGATCGGTTCTTTCCGCAACGGACATCGTTCCTCGCCAGGTCGTGGAATGTATTCTCAT GATGAAGTTCAGAGTCGTCGTAGAAGGTGTTGGGACGAGGCTGAAGCTTAGCGAGCTTAGCATGCAGTTGGAGGACATGGAAGGAGCTCATGTTAATGGG AGGAATAGTTTGCTGATTCTGAAGGAAGCACTGAGCTGTAGGAGGAGTAAGAACTATAGCGAGGTTCTGGAGTCGTGTCATTTGTACTCGAAAGTGCAAA GCGAGTTGAAGGAGGAAAAGATGAGGAACGAGAGCCGGATAGATAGGTGTTGTATCATAACTGGGATCACGGCTTTCGTATCTTTCTGGTACTACTTCCT GTGA
AA sequence Show only first row Show all	>Lus10003731 pacid=23169639 polypeptide=Lus10003731 locus=Lus10003731.g ID=Lus10003731.BGIv1.0 annot-version=v1.0 MTFPVTQVDSVSSLSCDIFYDILKRLDGSTLATAACTCAAFCSISKEERLWENVCSSMWPSTDREDVKALISSLGGFRKFYADCFPLIVNKEFSEYQWRE YLHYPEEWAEAEYYGDLEEYESVSPSDFVSIVDIRYKDRTVCSKVLWGIPNANGFNGWFHNCPFRIDLLSDSTEGEVFLSVNDGLPEITSMEKERKDGKL WKELRDGLRLSWIVVNTKNNQAANLASWSPLGGQRHWPTDKDFVIRFGSVLSATDIVPRQVVECILMMKFRVVVEGVGTRLKLSELSMQLEDMEGAHVNG RNSLLILKEALSCRRSKNYSEVLESCHLYSKVQSELKEEKMRNESRIDRCCIITGITAFVSFWYYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	0	1
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	1.0	0.9217
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	1.4	0.8872
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	4.5	0.8520
AT1G28540			unknown protein		Lus10042196 [exp]	5.5	0.8270
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	5.7	0.8718
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001740 [exp]	8.0	0.7694
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	9.5	0.8518
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	10.4	0.8677
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	11.5	0.8127
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	11.7	0.8054

Compare expression of checked genes

Lus10003731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.