Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06080 517 / 0 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 512 / 2e-180 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G06230 337 / 8e-113 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 329 / 5e-109 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 306 / 1e-99 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT1G48880 300 / 2e-97 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G20590 298 / 3e-96 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 296 / 5e-94 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 293 / 1e-93 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 292 / 3e-93 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028025 [exp] 795 / 0 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10034041 [exp] 490 / 7e-172 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 461 / 3e-160 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 455 / 7e-158 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 322 / 4e-105 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10017004 [exp] 317 / 1e-104 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 317 / 1e-104 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10013035 [exp] 316 / 2e-102 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10004225 [exp] 309 / 3e-101 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054400 [exp] 573 / 0 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G203900 [exp] 516 / 0 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.016G074800 [exp] 333 / 1e-110 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G195800 [exp] 315 / 6e-102 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 308 / 5e-100 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 307 / 1e-99 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.010G043300 [exp] 307 / 6e-99 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.002G071900 [exp] 294 / 1e-95 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.005G060800 [exp] 293 / 4e-95 AT1G48880 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.006G193900 [exp] 297 / 2e-94 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10003734 pacid=23169642 polypeptide=Lus10003734 locus=Lus10003734.g ID=Lus10003734.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCCACAACTTCAAGCTGCAACGGCGACTGGAGCATAACCATGGAGCTCAAGCGGCGGTTCAAACAATTTGAACCCTCTTTACGGATTATAG CCTTCTCATTGTTCCTTCTCTCGCTCTTAGTTTTCTTCTCTCGTGTGCCTTGGATTTACTACCGTGGAGCTTCTTCTTCCTGGCTGGGCGGACTGGTAGC TGGTGATGCTCCTCCTTCTGTTCCTCAGTCGGGTAATCGGGTCGGGTTTATGGAGCAGGAGGGAGATGGGTGCGATGTGTTTGATGGGAACTGGGTTTGG GATGAAGGGTACCCACTGTACGATAGCAAAGATTGCAGCTTTATAGACGGTGGGTTCAGATGCTTGGAAAATGGTAGGCCTGATAGCTTCTTCACCAAGT GGAGATGGCAGCCCACTCATTGCAATCTGCCCAGGTTTGACGCAAGGTTAATGTTGGAGAACTTGAGGAACAAGAGGCTAGTGTTTGTTGGAGACTCAGT AGGGAGGAACCAATGGGAGTCACTCCTCTGCATGCTCTCATCAGCCATTGCCGCTAATTCTTCTTCTTCGATCTATGAGTTGAATGGGAACCCGATCACG AAGCACACAGGGTTTCTCGTGTTCATGTTCAAGGAGTACAATTGCACGGTGGAGTATTACAGATCTCCATTCCTTGTGTACCAAGGAAGACCTCCACCAG GTGCCCCGAAGGGAGTCAGAATGACTTTGAGAGTGGATATGGTCGACTGGAGTTCGAAGAAGTGGCAGGATGCTGATGTTCTGATCTTCAACTCTGGACA CTGGTGGAACGACGAGAAGACCGTGAAAGTGGATTGTTACTTCCAGGAGGCAGAGGAAATCAAAATGAAGATGAGTGTTGAAGATGCATACCGAAGATCA ATTCAAACATTGATGAAATGGATTCACAGGAAAGTCAATATGAACAAGACTCAAGTTTTCTTCCGAACTTATGCTCCTGTACATTTCAGGGGTGGTGACT GGAGAACTAACGGAACTTGCCATCTGGAAAACCTTCCCGATTTAACCTCCACGGCTGATTCCTCAGATTACCGGTTCCAAGTCCTACTCGATGTTCTGTC AGAGCAGCGTTCGAACCAATCCCATACCGATACGATGAATGTGTTGAATATCACGCACTTAGCAGCAAAGAGGAAAGACGGGCACGCATCGGTATACTAT CTGGGGCCAGGGGCGGGCCTTGCTTCGATCCATCGTCAGGATTGCAGCCATTGGTGCCTCCCTGGGGTCCCTGATTCGTGGAACGAGCTCCTCTACGCCC TTTTGCTTAAGCGACAGCAAATGTCTGTTCGTTCCTCGCCATTTTCGCAAGCTCCAAGCTGA
AA sequence Show only first row Show all	>Lus10003734 pacid=23169642 polypeptide=Lus10003734 locus=Lus10003734.g ID=Lus10003734.BGIv1.0 annot-version=v1.0 MAVSTTSSCNGDWSITMELKRRFKQFEPSLRIIAFSLFLLSLLVFFSRVPWIYYRGASSSWLGGLVAGDAPPSVPQSGNRVGFMEQEGDGCDVFDGNWVW DEGYPLYDSKDCSFIDGGFRCLENGRPDSFFTKWRWQPTHCNLPRFDARLMLENLRNKRLVFVGDSVGRNQWESLLCMLSSAIAANSSSSIYELNGNPIT KHTGFLVFMFKEYNCTVEYYRSPFLVYQGRPPPGAPKGVRMTLRVDMVDWSSKKWQDADVLIFNSGHWWNDEKTVKVDCYFQEAEEIKMKMSVEDAYRRS IQTLMKWIHRKVNMNKTQVFFRTYAPVHFRGGDWRTNGTCHLENLPDLTSTADSSDYRFQVLLDVLSEQRSNQSHTDTMNVLNITHLAAKRKDGHASVYY LGPGAGLASIHRQDCSHWCLPGVPDSWNELLYALLLKRQQMSVRSSPFSQAPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	0	1
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	10.1	0.7161
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10026275 [exp]	12.4	0.6892
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	15.3	0.7185
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	16.2	0.6463
AT1G27170			transmembrane receptors;ATP bi...		Lus10002232 [exp]	16.8	0.7124
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10008067 [exp]	26.8	0.6820
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	31.7	0.6377
					Lus10040651 [exp]	59.0	0.6221
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	74.2	0.6586
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	89.8	0.6203

Compare expression of checked genes

Lus10003734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.