Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028026 [exp] 202 / 3e-68 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 128 / 8e-39 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003735 pacid=23169636 polypeptide=Lus10003735 locus=Lus10003735.g ID=Lus10003735.BGIv1.0 annot-version=v1.0 ATGAACAATCTCCTCTCCAAATCATCAACCTTACCCTTAGTCCTCCTCATCCTCCTCCTCACCATCTTCGCCGGCGGCGTGCCGAACACCAACGTCACCT CACTCCTCTGCAACGCCAACATCTACACCTCCGGCGACCCTTTCGCCATAAGCCTGGCCTACGTCGTAGGGGACATCGAGGCAAACGCTCCGGCTCGCGA CAAGTACGACTACTACAACATCTCCCCCTTCCCCAACGCCTTCGCCTACGGCCACGGCGTGTGTAATGTCAACATCAGCCGCGTTGACTGTGCCGCCTGC CTTGTGGCTGCGAAGGCCGCGCTGATCGCTGGCTGTCCAGACCGGATTGGGGGCCGGTCGGGGCTGGTTGATTGTTTGATTAGGTATGAACAGCGTCCTT TCGTTGATGATCAATAG
AA sequence Show only first row Show all	>Lus10003735 pacid=23169636 polypeptide=Lus10003735 locus=Lus10003735.g ID=Lus10003735.BGIv1.0 annot-version=v1.0 MNNLLSKSSTLPLVLLILLLTIFAGGVPNTNVTSLLCNANIYTSGDPFAISLAYVVGDIEANAPARDKYDYYNISPFPNAFAYGHGVCNVNISRVDCAAC LVAAKAALIAGCPDRIGGRSGLVDCLIRYEQRPFVDDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23210		HIG1, CRK13	cysteine-rich RLK (RECEPTOR-li...		Lus10003735 [exp]	0	1
AT3G10120			unknown protein		Lus10021358 [exp]	13.9	0.7103
AT3G11600			unknown protein		Lus10043404 [exp]	14.1	0.7297
AT4G37120		SMP2	SWELLMAP 2, Pre-mRNA splicing ...		Lus10007480 [exp]	17.7	0.6301
AT5G57550		XTR3, XTH25, EX...	xyloglucan endotransglycosylas...		Lus10012834 [exp]	18.0	0.6277
AT3G24535			unknown protein		Lus10023639 [exp]	25.2	0.6961
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	90.6	0.5566
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	103.3	0.5994
AT2G24370			Protein kinase protein with ad...		Lus10024212 [exp]	174.6	0.5312
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	205.6	0.5510

Compare expression of checked genes

Lus10003735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.