Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08310 191 / 4e-55 unknown protein AT1G44780 97 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028028 [exp] 520 / 0 AT4G08310 340 / 8e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085000 [exp] 271 / 1e-85 AT4G08310 285 / 2e-90 unknown protein Potri.005G176400 [exp] 153 / 1e-40 AT4G08310 153 / 2e-40 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09649 [flax] [poplar] CHZ Histone chaperone domain CHZ
Representative CDS sequence Show only first row Show all	>Lus10003736 pacid=23169631 polypeptide=Lus10003736 locus=Lus10003736.g ID=Lus10003736.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGAAATCGCAAGCCATCGTGCCGGCGACAAAGGATGCGGCGGAGATCAAGGACGCGCAAACGGATGTCGAGTCCAACATTAGGACTGCTA TGAAGTCTCGCGTCAGCTACTTCAAAGAACAATCCGACTCATTGACATTTGAGGGAGTAAGGAGAGTCTTGGAAGAGGACTTGGGTCTGGAGAAATTTGG CTTGGATGTGCATAAGAGATTTGTGAAGCAAATGCTGCTGGAGAGTTTACAAGGTGCTGTTGCCTACAAGGATTCAACAAAAACAGTGGTCGAAGTTCCT TGTTCAATTAAAGATGAAGTATCTGAAACACCTGAAGGGGATGAATCAAAGCCTGATCCAAAGGAGTTTAACAGTGAGGAGGAGGAGAAAATGGAAGATT CCCCTGTTATGGGACTTCTGACAGGACAGAAGAAATCAAAGACGGATGTTAACAAAGCCAAAGATAACGAGAAGAAAGTTCCTACTGAGAACATCATAAA AAAGGCCATATGGAAGAGGGAATCATATATTGGAGCAAACACTGAAGCAATTACAATGGCTGGATTGCGCCGACTTTTAGAGGAAGATCTTAAACTTGAA AAGGGTGCACTTGATTCATTTAAGAAATTTATCAGCAGTCAATTAGATGAGGTACTAGAATCTATTGAAGTCAAGGCTTCGAAGAAGAAAACTTTGATGA CTAAATCTCAAAGTAAACCTGCTAAAAAGGTGAGTAAGGTGAAATCAGATTCTTCTGTCAATGACAATGATGAAGAGGACATAGATGAAGTAAAACCTAA AAAGAAGGCTAGTTCTTTAAAAAAGACAGTGAATTCTAAGGGGTCAAAAAAACGGGGAAGATCAGAGAAAGAATCTAAGGTGTCTGCTAAGAAACGAAGT AAGCCTATGAAATCTCCATCGAATGACGATAGCAAATCAGAGGATGAAGAAAATGTTTCTGAAGATGGCGGTTCACAATCGTCAGGGGAAAAACCAGTGA AGAAAAGGGAGGCTTCTACTCCTGCCACAACATATGGGAAGCAAGTGGAGCATCTAAAATCGACTATCAAAGCTTGCGGGATGAGTGTAGCGCCAACTGT ATATAAGAAGGTAAAGCAGGTCCCTGAAAAAATAAAAGAAGTTAGAAGGAAAAAGGAAAGAGCTAAAGAACTTGAGGGCATTGACATGAGCAACATTGTG TCCAGCTCACGTAGAAGGTCCACAAGCAGCTATGTTCCTCCTCCAAAGCCAAAAGTACCGATTGAAAGTGGCAGCGAGAGTGACGAGGAGGATGAGGATG AAGATGATGAAGACGATGATGATAACAACGAGGATGATGTTGTGGATGAAGAAAGCCAAAGTGAGGAACTTGATGACGGTAAGTAA
AA sequence Show only first row Show all	>Lus10003736 pacid=23169631 polypeptide=Lus10003736 locus=Lus10003736.g ID=Lus10003736.BGIv1.0 annot-version=v1.0 MAEEKSQAIVPATKDAAEIKDAQTDVESNIRTAMKSRVSYFKEQSDSLTFEGVRRVLEEDLGLEKFGLDVHKRFVKQMLLESLQGAVAYKDSTKTVVEVP CSIKDEVSETPEGDESKPDPKEFNSEEEEKMEDSPVMGLLTGQKKSKTDVNKAKDNEKKVPTENIIKKAIWKRESYIGANTEAITMAGLRRLLEEDLKLE KGALDSFKKFISSQLDEVLESIEVKASKKKTLMTKSQSKPAKKVSKVKSDSSVNDNDEEDIDEVKPKKKASSLKKTVNSKGSKKRGRSEKESKVSAKKRS KPMKSPSNDDSKSEDEENVSEDGGSQSSGEKPVKKREASTPATTYGKQVEHLKSTIKACGMSVAPTVYKKVKQVPEKIKEVRRKKERAKELEGIDMSNIV SSSRRRSTSSYVPPPKPKVPIESGSESDEEDEDEDDEDDDDNNEDDVVDEESQSEELDDGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08310			unknown protein		Lus10003736 [exp]	0	1
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	2.4	0.9123
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	3.5	0.8923
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	5.3	0.8779
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	5.3	0.9042
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	7.5	0.9027
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	7.7	0.8927
					Lus10028086 [exp]	9.0	0.8564
AT4G08310			unknown protein		Lus10028028 [exp]	9.1	0.8234
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	10.4	0.8934
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	10.4	0.8799

Compare expression of checked genes

Lus10003736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.