Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44790 274 / 5e-94 ChaC-like family protein (.1) AT4G31290 201 / 6e-65 ChaC-like family protein (.1) AT5G26220 196 / 3e-63 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028029 [exp] 389 / 1e-138 AT1G44790 257 / 4e-87 ChaC-like family protein (.1) Lus10020181 [exp] 189 / 6e-60 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10026985 [exp] 179 / 7e-56 AT4G31290 332 / 5e-116 ChaC-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G176300 [exp] 314 / 4e-110 AT1G44790 289 / 9e-101 ChaC-like family protein (.1) Potri.018G002900 [exp] 196 / 4e-63 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.006G279000 [exp] 195 / 1e-62 AT4G31290 327 / 5e-115 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [flax] [poplar] AIG2 PF04752 [flax] [poplar] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Lus10003737 pacid=23169623 polypeptide=Lus10003737 locus=Lus10003737.g ID=Lus10003737.BGIv1.0 annot-version=v1.0 ATGCTACTTGTATCGCCCGCCATTGCTGCGATTGGATCATTCAGACTACTGCCTTACTGCTCTCCGTCTCTTTCATTTCCCTCACGAGGGAAAGGGAAAG AACACGACTTGATCGTCAAATCGGATCAAAGAATGATGGAGGAGATGTGGGTATTTGGGTACGGTTCGCTGATATGGAAAGCTGGGTTCAACTACGACGA TCGCCTCGTCGGATTCGTCAAGGGATATCGCCGCGTCTTTTACCAAGGCAGCACTGACCACAGAGGCACCCCCGAGTTTCCCGGAAGAACGGTCACCTTG GAGCCTGCTAATGGAGAGATTTGTTGGGGAGTTGCTTACAAGATCTCCAGTAAAGAAGACAGAGATTCTGCTTTGGATTATTTGGAAGTGAGGGAGAAGC AGTATGATGAGAAGGCTTACCTTGATTTCTTCACTGATCCAGCAGGTATAGCTCCTGCAATTCCAGGTGTAATGGTGTACATTGGTTCTGCAGACAAGGA AAGGAACCAGAACTACTTGGGGTCAGCACCCTTGGAAGACATAGCCAAACAAATCGCTAGTGCTCAAGGACCATCGGGCCCCAACACGGAGTACCTCTTT AAACTCGAAGCAGCACTTCTCCACATCGGATGCAAGGATAAACACGTGATGGACCTCGCAAGCAAAGTAAGAGAGATTCTTATAGAGGCGGAATGA
AA sequence Show only first row Show all	>Lus10003737 pacid=23169623 polypeptide=Lus10003737 locus=Lus10003737.g ID=Lus10003737.BGIv1.0 annot-version=v1.0 MLLVSPAIAAIGSFRLLPYCSPSLSFPSRGKGKEHDLIVKSDQRMMEEMWVFGYGSLIWKAGFNYDDRLVGFVKGYRRVFYQGSTDHRGTPEFPGRTVTL EPANGEICWGVAYKISSKEDRDSALDYLEVREKQYDEKAYLDFFTDPAGIAPAIPGVMVYIGSADKERNQNYLGSAPLEDIAKQIASAQGPSGPNTEYLF KLEAALLHIGCKDKHVMDLASKVREILIEAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44790			ChaC-like family protein (.1)		Lus10003737 [exp]	0	1
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10010456 [exp]	4.6	0.9234
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10023299 [exp]	13.2	0.9156
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	15.2	0.9161
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	16.6	0.8904
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	16.7	0.9174
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	17.9	0.9142
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	23.4	0.8848
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	25.8	0.9154
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10028227 [exp]	26.5	0.9162
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	27.0	0.9083

Compare expression of checked genes

Lus10003737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.