Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08300 445 / 8e-157 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 444 / 5e-156 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 435 / 5e-153 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 375 / 5e-129 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 370 / 6e-127 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 353 / 3e-120 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 348 / 3e-118 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 307 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 307 / 3e-102 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 305 / 9e-102 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028030 [exp] 715 / 0 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 373 / 5e-128 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 370 / 3e-127 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 369 / 8e-127 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 369 / 2e-126 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 365 / 4e-125 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 363 / 2e-124 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 372 / 1e-122 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 358 / 5e-122 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085100 [exp] 504 / 5e-180 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 476 / 1e-168 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 381 / 5e-132 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 381 / 2e-131 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 380 / 4e-131 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 374 / 8e-129 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 362 / 1e-123 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 358 / 6e-122 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 351 / 3e-119 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 344 / 2e-116 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10003738 pacid=23169635 polypeptide=Lus10003738 locus=Lus10003738.g ID=Lus10003738.BGIv1.0 annot-version=v1.0 ATGGGAGGGAAAGGTAGTTCGTGGTGTGAAATGGTGAAGAAGGCCAAGCCATACTTGGCAATGGTGTCGCTTCAGTTCGGGTATGCAGGGATGTACATCG TGACAATGTTGTCGTTCAAACACGGGATGAACCATTACGTTCTTGGCGTCTACCGCCATGTTGTTGCCACCATCGTCATCGCCCCCTTCGCTATCATCCT CGAGAGGAAAACAAGACCAAAGTTGACATTCGGAATCTTCATGCGAATAATAGCCCTTGGTTTCCTCGAGCCAGTGCTGGATCAGAACCTTTATTATGTT GGAATGAAGTACACGTCAGCAACATTTGCATCCGTGTCTGTCAATATCCTGCCTGCCATTACCTTCGTCATGGCCCTAATTTTCAGGCTGGAAAGCGTAA ACCTGAAGAAATTTCACAGCGTGGCCAAGATCATTGGGACGGTGATCACAGTTTCAGGAGCCATGGTTATGACTCTATACAAAGGTCCAATCTTGGAGTT CTTAACCCCTTCGTCACATTCCTCGCATTCGTCGTCAGCTCACGACGCAACCAACGGAGAAGAGAACTGGGTCTTGGGCCCACTCTTTCTTCTCGGCAGT TGCATCGGCTGGTCCGCCTTCTTCATCCTCCAATCGTACACGTTGAGGTTGTATCCGGCGGAGCTGTCTTTGACGGCGTGGATATGCTTGATGGGCACTA TTGAAGGATCTGTCGTTGCACTCGCCGTTGAAAGGGGGAACATGGCCATATGGGAAATTGGATTCGACTCTAGGCTTCTTGCTGCTGCTTACACTGGGAT CGTATGCTCGGGAGCTGCATATTACATTCAAGGAGTCGTGATTAAGGAACGTGGACCGGTGTTCGTTACCTCGTTCAGCCCTCTTTGTATGATCATCACT GCCATCCTTGGATCCCTTGTTCTTGCTGAGAAAGTCACCCTCGGCAGTGTGATTGGAGCACTTCTGATAGTATGCGGACTCTACACTGTGGTATGGGGGA AGAGCAAAGATCGAAAAATCTCGGCCGAGACAGACGAAATCGAGTGGAAGAACGGAGGTGAAGGGCAGGAGCTGCCTGTTGCGAATGTTATCACTAACTC CTCAACCCGGTAA
AA sequence Show only first row Show all	>Lus10003738 pacid=23169635 polypeptide=Lus10003738 locus=Lus10003738.g ID=Lus10003738.BGIv1.0 annot-version=v1.0 MGGKGSSWCEMVKKAKPYLAMVSLQFGYAGMYIVTMLSFKHGMNHYVLGVYRHVVATIVIAPFAIILERKTRPKLTFGIFMRIIALGFLEPVLDQNLYYV GMKYTSATFASVSVNILPAITFVMALIFRLESVNLKKFHSVAKIIGTVITVSGAMVMTLYKGPILEFLTPSSHSSHSSSAHDATNGEENWVLGPLFLLGS CIGWSAFFILQSYTLRLYPAELSLTAWICLMGTIEGSVVALAVERGNMAIWEIGFDSRLLAAAYTGIVCSGAAYYIQGVVIKERGPVFVTSFSPLCMIIT AILGSLVLAEKVTLGSVIGALLIVCGLYTVVWGKSKDRKISAETDEIEWKNGGEGQELPVANVITNSSTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	0	1
AT1G75810			unknown protein		Lus10033134 [exp]	1.7	0.8652
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	2.0	0.8466
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	2.4	0.8298
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	8.1	0.7977
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	10.0	0.8116
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	13.6	0.8068
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	18.8	0.7289
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	20.8	0.7784
AT3G10470	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021409 [exp]	21.2	0.7964
AT2G46550			unknown protein		Lus10012748 [exp]	22.8	0.7919

Compare expression of checked genes

Lus10003738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.