Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17710 221 / 7e-70 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 201 / 1e-62 Co-chaperone GrpE family protein (.1.2) AT4G26780 54 / 7e-08 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 47 / 1e-05 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028034 [exp] 548 / 0 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 332 / 1e-112 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10029654 [exp] 313 / 2e-105 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 245 / 2e-79 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10000783 [exp] 50 / 2e-06 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10043180 [exp] 49 / 3e-06 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10032565 [exp] 48 / 6e-06 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 45 / 3e-05 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090000 [exp] 284 / 1e-94 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 254 / 4e-83 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.013G067900 [exp] 213 / 2e-66 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.011G089000 [exp] 46 / 2e-05 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.015G065800 [exp] 46 / 2e-05 AT4G26780 291 / 3e-97 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [flax] [poplar] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Lus10003741 pacid=23169634 polypeptide=Lus10003741 locus=Lus10003741.g ID=Lus10003741.BGIv1.0 annot-version=v1.0 ATGGCGATTTCACTCTCGAACCAAACCCTCTTGACCTCTCCTCCTCCGGCTCTCTCTGCTCTCACCTTCACCAAAACCCTAGACTCCACCAAACCCAATC CCCTTCTTTTCTCCTTCTCCCATCCGAAACCTCTCAAGGGATTGTTTCTCTCTTCTTTCGTGCCTGCGATATCCGTAGTCAGCAGCTGCAGCAAGAAGAG CAGCTTCCATGTCCGCCGCCGCTCCTTCCTTACTCACTGTGCCCAGCAGGAAGCTACTTCGGCCGACGCCGAAACGCTTACAAATGAAGAAGAGGGAAAT CTGAATACCGAAGAAGCGGAAGTAGCTGGAAAAGAGGAAACCGAGGAAGAATCAGGAGTAGCCGACAGTGAGGAACTGGAAGCGATTCCCGAAAATGAAT CCGAGTTGAAGAATCTTTTCTACAGTTACAAGGAAGCTATACTTTCTGGCGATGAAGCAACTGCTTCCGAGATTGAGGCTAAGATAGAAGCTATAGATAG TAACAACAACGAACTCATGCTAAAGGTTTCGGCTTTATCTGCCGAGACATCCTCCAACAGGGACAAGTACATCCGCTTGCAAGCCGATTTCGACAATTTC AGGAAAAGATCAGAAAACGACAGACTGAACATCAGAAGTGACGCCCAAGGAGCGGTGATTGAGAGCCTTCTGCCGATGACCGACAGTTTCGAAAGAGCCA AACAGTCGATAAAGCCAGAAACAGAGAAGGAGAAGCAAATCGATAAGAGTTATCAGGGTATATACAAACAGTTTTTGGAGATCATGAAAGGTTTGCAGGT GATTGCTGTGCCAACAGTCGGACATCCTTTCGATCCTGAGTTTCACGAAGCGATTGCGAGGGAAGATTCGGAAGAGTACGAGGAAGGGATCATTCTGCAA GAGTTCCGTCCAGGATTTCGCCTCGGCAACAGGCTGATAAGAGCAGCTATGGTGAAAGTTTCTGCAGGGCCTGGACCTAAAACTGAAGATGCTCCTCCTG CTAGTGTTGCCGACCAGGTGGAGCAGGAAGCTGCTACAGAAGGATAA
AA sequence Show only first row Show all	>Lus10003741 pacid=23169634 polypeptide=Lus10003741 locus=Lus10003741.g ID=Lus10003741.BGIv1.0 annot-version=v1.0 MAISLSNQTLLTSPPPALSALTFTKTLDSTKPNPLLFSFSHPKPLKGLFLSSFVPAISVVSSCSKKSSFHVRRRSFLTHCAQQEATSADAETLTNEEEGN LNTEEAEVAGKEETEEESGVADSEELEAIPENESELKNLFYSYKEAILSGDEATASEIEAKIEAIDSNNNELMLKVSALSAETSSNRDKYIRLQADFDNF RKRSENDRLNIRSDAQGAVIESLLPMTDSFERAKQSIKPETEKEKQIDKSYQGIYKQFLEIMKGLQVIAVPTVGHPFDPEFHEAIAREDSEEYEEGIILQ EFRPGFRLGNRLIRAAMVKVSAGPGPKTEDAPPASVADQVEQEAATEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	0	1
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	2.8	0.8733
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	3.5	0.8714
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	4.0	0.8727
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	9.9	0.8401
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	10.8	0.8108
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	11.0	0.8536
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	11.7	0.8617
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	12.4	0.8596
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	12.5	0.8453
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	14.3	0.8668

Compare expression of checked genes

Lus10003741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.