Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40420 109 / 2e-30 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G01570 107 / 5e-30 Oleosin family protein (.1) AT3G27660 99 / 2e-26 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT2G25890 59 / 2e-11 Oleosin family protein (.1) AT5G51210 55 / 6e-10 OLEO3 oleosin3 (.1) AT4G25140 54 / 1e-09 OLE1, OLEO1 oleosin 1 (.1) AT5G07550 45 / 1e-06 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT5G07530 42 / 0.0001 ATGRP17, ATGRP-7, GRP17 ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, glycine rich protein 17 (.1.2) AT3G18570 40 / 0.0003 Oleosin family protein (.1) AT5G61610 40 / 0.0004 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028035 [exp] 246 / 3e-84 AT3G01570 139 / 8e-42 Oleosin family protein (.1) Lus10032127 [exp] 98 / 5e-26 AT3G01570 162 / 4e-51 Oleosin family protein (.1) Lus10014559 [exp] 96 / 2e-25 AT3G01570 159 / 1e-49 Oleosin family protein (.1) Lus10017460 [exp] 65 / 1e-13 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 63 / 4e-13 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10027161 [exp] 59 / 1e-11 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10039683 [exp] 59 / 3e-11 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10031387 [exp] 57 / 1e-10 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10017992 [exp] 57 / 3e-10 AT3G18570 136 / 4e-41 Oleosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G083400 [exp] 125 / 5e-37 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.015G081901 [exp] 120 / 6e-35 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.T125308 [exp] 120 / 6e-35 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.001G345800 [exp] 92 / 2e-24 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.017G071800 [exp] 86 / 1e-21 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.001G080000 [exp] 59 / 9e-12 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.018G057800 [exp] 59 / 2e-11 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.003G150600 [exp] 58 / 2e-11 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.006G234900 [exp] 54 / 2e-09 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.012G059400 [exp] 45 / 2e-06 AT3G18570 113 / 4e-32 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10003742 pacid=23169630 polypeptide=Lus10003742 locus=Lus10003742.g ID=Lus10003742.BGIv1.0 annot-version=v1.0 ATGGGTGACACAGTAAAGAGCATGCTCCCGGAACACGGCCCGTCCACCCAACAAATACTAGCGGTTGTAACTCTCCTCCCGTTGGGAGGAATCCTGCTCC TCCTCTCCGGGCTCACGCTGGCGGGGACGTTGGCCGGGCTGACAGTCACGTTCCCTGTTTTCGTGATCTGCAGCCCGGTGATAGTGCCGGCTGCGCTGGT GATCGGGATGTCCGTGATGGGGTTCTTGACTTCTGGTGCTTTCGGGATTACTGCGCTGTCGTCGTTGTCGTGGATGGCTAATTATATTAGGAGGATGATC GGGATGCCGGGCGGGTCGGCAGTGAATCAGTTGGAATATGCAAAGAGGAGGGCTCAGGATGCGGCCGGGCAGGTGGGGCAGACGGTGGGGCAGAAGGTGA GGGATGTGGGGCAGACTGTGCAGAATAAGGCGCAGGAAGGTGGTAGGGGGACTACTCATCAGGAAGGTACAACCAGGACTTGA
AA sequence Show only first row Show all	>Lus10003742 pacid=23169630 polypeptide=Lus10003742 locus=Lus10003742.g ID=Lus10003742.BGIv1.0 annot-version=v1.0 MGDTVKSMLPEHGPSTQQILAVVTLLPLGGILLLLSGLTLAGTLAGLTVTFPVFVICSPVIVPAALVIGMSVMGFLTSGAFGITALSSLSWMANYIRRMI GMPGGSAVNQLEYAKRRAQDAAGQVGQTVGQKVRDVGQTVQNKAQEGGRGTTHQEGTTRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	0	1
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10001863 [exp]	1.0	0.9146
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10005468 [exp]	2.8	0.7427
					Lus10020703 [exp]	3.9	0.7209
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	7.5	0.7111
AT4G02210			unknown protein		Lus10008312 [exp]	8.1	0.7178
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	8.4	0.7042
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10008413 [exp]	9.5	0.6822
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10015076 [exp]	15.2	0.7173
					Lus10022394 [exp]	16.9	0.7277
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	17.1	0.7387

Compare expression of checked genes

Lus10003742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.