Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77860 287 / 2e-94 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT2G29050 221 / 2e-68 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G12750 199 / 8e-61 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT3G53780 197 / 3e-59 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 194 / 7e-59 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 183 / 2e-54 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT4G23070 171 / 8e-50 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 138 / 2e-37 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G25290 57 / 1e-08 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 45 / 5e-05 Rhomboid-related intramembrane serine protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028036 [exp] 672 / 0 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023789 [exp] 223 / 7e-69 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 211 / 9e-65 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 213 / 3e-62 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024497 [exp] 194 / 1e-58 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 191 / 1e-57 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10005464 [exp] 192 / 2e-57 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 166 / 5e-47 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10022969 [exp] 57 / 1e-08 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090400 [exp] 404 / 4e-139 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.009G031900 [exp] 233 / 7e-73 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 226 / 2e-70 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 206 / 3e-62 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.015G142000 [exp] 191 / 3e-57 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 190 / 4e-57 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 187 / 5e-56 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 184 / 1e-54 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.003G019500 [exp] 56 / 2e-08 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.017G112900 [exp] 42 / 0.0008 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10003743 pacid=23169647 polypeptide=Lus10003743 locus=Lus10003743.g ID=Lus10003743.BGIv1.0 annot-version=v1.0 ATGGAAGCAGTAGTAGAAACACTGAAGTCGGAGGCGAAGATCGAGATCGCTCCACCTCTTCCACCGCTGCTTCCACCACTGCCGCCGCCGCCGTCATCGT CAAGCACCTTTTCTCTGGAGCTCACCGCTGATGATGAAGCTACATCGGAGCACAAGACTCCGTTCTTCAGATCGCGTTATCGCAGCAAACGGAGGGACAC CTGGATCATCTCTGCATTCGCCGTCACCTACGTCGCGGTCTTCGTCGTCACGATGTACGTGAACGACTGCCGGCATAACACCCGCGGCGACTGCGCTGCG AAGGGACTGTCACGGATGTCGTTTCAGCATCTCTCGGAGAATCCCTTCCTCGGTCCTTCTTCGTCAACGCTAGACAAAATGGGAGCTCTTCGAAAGACTT TACTGGAGAAACATCAAACTTGGCGTATCCTGTCATCTCCATGGCTCCACGCTGGTGTGTTACACCTTATCATCAATCTGATGTGTATTCTCGTGCTAGG AATATTCTTGGAGCAAGAGTATGGAGCAGCGAGGACTGGATTGATATACATAGGCTCTGCTGTTTTAGGCACTTTAGTTGGTACACTCTTCATTCAGGAT AGCCCTGCTGTTACTTCATCCAGTGCTTTACATGGACTCGTTGGAGCTGCAATCTCTGCACTTACAAAGAACTGGAAACTGTACACTAGTAAGGCCAAAG CTGTGGCAGTGCTCACTTTCATCTTGGTCACTAATTTTGCACTGGGTTTGCTACCTTTAGTCTCCAACTACTCGAATGTTGGTGGATTTGTATCTGGGTT ACTCCTCGGGTTCGCACTTCTGTACCCACCTCAGCCTGGCCAAACCTCCCAGAAATTGGTAGATACTAGTGGATATCACACCAAGGATCCTCTGAACTGG AAGCAGACGGTAAAGGTGGAAAGGCCTGGACTAAGAAGCGTCTCTCTTGTAATCTTCGCTCTACTAATTGCTGGATGCCTCGGGGGAGTAGTTCAAGGGA TCAATCTGGGATCCTATTGCCCATGGTGCCGATATCTCGACTGCATCCCGTCCAGGAGTTGGAGTTGCAGTGACATGACTACTGCTTGCGAGGCAATGGC AAGTGATGCTGAGCTAACTTTGACGTGTGTGGCGAATGGAAACTTCAGGATATTCCCTTTCACAAACATCTCACAGGCAAGAGCTCAAGACTTATGCACC TTGATATGCAACCATTAG
AA sequence Show only first row Show all	>Lus10003743 pacid=23169647 polypeptide=Lus10003743 locus=Lus10003743.g ID=Lus10003743.BGIv1.0 annot-version=v1.0 MEAVVETLKSEAKIEIAPPLPPLLPPLPPPPSSSSTFSLELTADDEATSEHKTPFFRSRYRSKRRDTWIISAFAVTYVAVFVVTMYVNDCRHNTRGDCAA KGLSRMSFQHLSENPFLGPSSSTLDKMGALRKTLLEKHQTWRILSSPWLHAGVLHLIINLMCILVLGIFLEQEYGAARTGLIYIGSAVLGTLVGTLFIQD SPAVTSSSALHGLVGAAISALTKNWKLYTSKAKAVAVLTFILVTNFALGLLPLVSNYSNVGGFVSGLLLGFALLYPPQPGQTSQKLVDTSGYHTKDPLNW KQTVKVERPGLRSVSLVIFALLIAGCLGGVVQGINLGSYCPWCRYLDCIPSRSWSCSDMTTACEAMASDAELTLTCVANGNFRIFPFTNISQARAQDLCT LICNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10003743 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	2.4	0.8926
AT3G07200			RING/U-box superfamily protein...		Lus10040641 [exp]	4.0	0.8736
AT1G06980			unknown protein		Lus10026407 [exp]	8.0	0.9006
					Lus10000528 [exp]	11.4	0.8159
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041249 [exp]	19.4	0.8852
AT3G19990			unknown protein		Lus10028680 [exp]	25.6	0.8923
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	26.6	0.8921
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	35.3	0.8915
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	35.9	0.8909
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	42.1	0.8892

Compare expression of checked genes

Lus10003743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.