Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36990 278 / 8e-86 unknown protein AT4G08510 222 / 6e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028037 [exp] 791 / 0 AT1G36990 370 / 3e-121 unknown protein Lus10042697 [exp] 430 / 2e-145 AT1G36990 352 / 4e-115 unknown protein Lus10029655 [exp] 422 / 5e-142 AT1G36990 364 / 9e-120 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172100 [exp] 417 / 3e-139 AT1G36990 250 / 3e-75 unknown protein Potri.002G089100 [exp] 408 / 6e-136 AT1G36990 281 / 5e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003744 pacid=23169648 polypeptide=Lus10003744 locus=Lus10003744.g ID=Lus10003744.BGIv1.0 annot-version=v1.0 ATGGAAAGAAGTGAACCCTCATTAGCTCCAGAATGGCTGAGAACCACTGCAAGTGTCTCAGGAGGTGGCAGTTCTTCTATCCACCACTTTGCTTCATCTT CTTCCCACTCAGATGTGTCTTCAAGGAGTCGGACGTCGAAGAGTAAAACTGATTTAGATTCTCCTCGCCATGCGATGTTGGATCGTACGTCTTCGTCTAA TTCTCGGAGGAGTTCTAGTAGTAGTAATGAGTCTGGGAAGCATGCCTACAGTAGTTTTAGTAGGAACCACCGTGACAAGGATTGGGACAGGGAGAAAGAT AGGTTGAGTTTCGCAGACCACTGGGATCGAGACCCTTCCGATTCTCTGGGAAGCATATTGACTGGTAGGATCGATAAGGATGCACTAAGGCGGTCTCAGT CGTTGGTTACCACCAGGAAACAGAGTGAGGTTTTGCCGCGTAGGGACTTTAGGAATGGAAGTAGTAGCAGCAATCATCATGTAAATGGGAATGGCTTGAT ATCTGGTAAGGGGAATACTGGTCAGAAAGCTACCTTTGAGAAGGACTTTCCGTCTCTTGGTACTGAGGAGAGACCGTTTGTGCTGGAAGTAGTGAGGGTG TCGTCTCCTGGGTTAAGCAATGCTGTCCAGATTGTGTCGGCTGGGAGCTCCGCTTTGATCAATGGGGAGGGATGGACTTCTGCTCTGGCGGAAGCTCCTC CTCATGCTGTTGGAACCAGTAGCATAAGTTCGGCACTTACCGTGCAAGTTGTTGCTCCATCTGCATCTGCTCCTCCGAGTTCCATGGCTGTTCTTAATAT GGCTGAAACGTTGACTCAGGCTCCTGCAAGAGCTCGTTCAACCCCACAGTTAGCAGTTGAGACACAAAGGCTTGAGGAATTGGCTATTAAGCAGTCAAGG CAACTGAGACCAGTGACACCTTCTTTGCCTAAGAGTTCGGTTAATGCATCTGACAAGTTAAAGCCGAAAGCAGTAATGAGATCTGGGGAAATGAGTATGG CTGCCAAGAATTTGCAGCAACAGCAGCCTTCATTTCATCCTACCAATCAATCCCTTGTCGGTGGAAAGCCCGAAGCACAAAAATCGTCACTTGGAAAGCT TTTTATCCTCAAGCCTGGGAGAGAAAATGGCGCATCTCATTCTCCAAAGGATGTTGCTAGTCCAACAAATAGTAATGGCAGAGTAGTAAATACACAAGCT GTTCCTACATCAGTTGTATCTGCATCTCCGAGGAGCCCGATTAACTCGAAAAACTTCTCTGGGGATCGCAGGCCAGCAGGATCAAATGTGTTCAGTGCCG AGAAGAAGCCTTCCTTATCTCAGACTCAGAGTAGGAATGATTTCTTTAATCTACTGAAGAAGAAAACCTCTGGAAACTCTTCTGCAGCCGCAACAGATTC TTCAACCGGTGCTCTGACTGCTGCTGGCGGAGAGAAGTTGAGTTTTGCGAGTAAAGAATCGGTCAGTGATCCAGAGAAGAGTCGACAAGCTCTTGATGAT GGCGATCAGTTAACTAGCAATGATGGTGGTATTGATCCTCCTCACGAGGAAGTGCAGAGATTCTCCGAGGAAGAGGCTGCATTCCTCCGCTCCCTTGGCT GGGAAGAAACTGCTGGAGAGGAAGAAGGCCTTACCGAAGAGGAGATCAGTGCCTTCTACAAGGAGTACATGAAAATGAAGCCTTCGGCGAAAGTGAATGG CGAATTGCAGCACCAGAAGTTGGTTGAATCTGAAGATTGA
AA sequence Show only first row Show all	>Lus10003744 pacid=23169648 polypeptide=Lus10003744 locus=Lus10003744.g ID=Lus10003744.BGIv1.0 annot-version=v1.0 MERSEPSLAPEWLRTTASVSGGGSSSIHHFASSSSHSDVSSRSRTSKSKTDLDSPRHAMLDRTSSSNSRRSSSSSNESGKHAYSSFSRNHRDKDWDREKD RLSFADHWDRDPSDSLGSILTGRIDKDALRRSQSLVTTRKQSEVLPRRDFRNGSSSSNHHVNGNGLISGKGNTGQKATFEKDFPSLGTEERPFVLEVVRV SSPGLSNAVQIVSAGSSALINGEGWTSALAEAPPHAVGTSSISSALTVQVVAPSASAPPSSMAVLNMAETLTQAPARARSTPQLAVETQRLEELAIKQSR QLRPVTPSLPKSSVNASDKLKPKAVMRSGEMSMAAKNLQQQQPSFHPTNQSLVGGKPEAQKSSLGKLFILKPGRENGASHSPKDVASPTNSNGRVVNTQA VPTSVVSASPRSPINSKNFSGDRRPAGSNVFSAEKKPSLSQTQSRNDFFNLLKKKTSGNSSAAATDSSTGALTAAGGEKLSFASKESVSDPEKSRQALDD GDQLTSNDGGIDPPHEEVQRFSEEEAAFLRSLGWEETAGEEEGLTEEEISAFYKEYMKMKPSAKVNGELQHQKLVESED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36990			unknown protein		Lus10003744 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	5.7	0.8244
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	6.3	0.7785
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	9.5	0.8472
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	20.1	0.7682
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	30.9	0.7966
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019610 [exp]	33.9	0.6782
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	40.3	0.7688
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	44.0	0.7612
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	44.0	0.7744
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	56.3	0.7212

Compare expression of checked genes

Lus10003744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.