Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08500 399 / 2e-136 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08480 367 / 4e-122 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G08470 357 / 6e-121 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G12020 332 / 5e-104 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G63700 248 / 4e-76 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 240 / 8e-75 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 223 / 4e-68 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 221 / 7e-68 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT5G66850 223 / 1e-67 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G06030 208 / 2e-62 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028038 [exp] 592 / 0 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10042698 [exp] 511 / 0 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 507 / 1e-179 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10042750 [exp] 444 / 1e-158 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10024645 [exp] 248 / 1e-75 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 247 / 1e-75 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 246 / 3e-75 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 243 / 2e-74 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 243 / 3e-73 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172200 [exp] 506 / 3e-179 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.002G088900 [exp] 499 / 2e-176 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.005G062500 [exp] 250 / 2e-78 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 248 / 1e-77 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.015G146700 [exp] 252 / 2e-77 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 249 / 4e-76 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 247 / 2e-75 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 246 / 6e-75 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 218 / 6e-66 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.008G149500 [exp] 215 / 7e-65 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003745 pacid=23169627 polypeptide=Lus10003745 locus=Lus10003745.g ID=Lus10003745.BGIv1.0 annot-version=v1.0 ATGTCGAATATCTCACCTAATGGGAGATTCAGGAGGATTATCACCGAATGGGATAAAAGAGACCTTCTGGGGCGTGGCTCGTTTGGGTCCGTTTACGAGG GAATTTCTCATGATGGATTCTTTTTTGCTATCAAAGAGGTTTCCTTGCTTGATCAAGGAAGCCAGGGAAGGCAAAGCGTATATCAACTCGAGCAGGAGAT TGCTCTCTTAAGTCAGTTTGAGCATGAAAACATTGTTCAGTATTATGGCACGGACAAGGATGCATCACACCTGTACATCTTTCTAGAACTTGTTACTAAA GGTTCTCTTCTGAGTCTTTATCAGACATACCCTCTTCGAGATTCTCAGGTTTCAGCATACACTAGGCAAATTCTTCACGGTTTGAAGTATCTCCATGACC GCAATGTGGTTCACAGGGATATCAAGTGCGCCAATATACTAGTTGATGCAAATGGGTCCGTGAAGCTTGCAGATTTTGGACTGGCAAAGGCAACTAAACT GAATGATGTGAAATCATGCAAGGGGACTGCATTTTGGATGGCACCTGAGGTTGTTAATGGGAAAAGCCAAGGATATGGGCTTCCAGCTGATGTCTGGAGT CTCGGATGTACAGTGCTAGAGATGTTAACTCGTCAGATTCCATATTCTGATTTAGAAAACCCGATGACAGCATTGTTCAAGATCGGCAGAGGCATACCCC CTACCGTCTCCGAATCTCTGTCAAGAGATGCACGAGATTTCATTCTGAAATGCCTCCAAGTCGATGCGGCTGATCGTCCCACTGCTGCTCAGCTCTTGGA CCATCCATTCGTTCAGCGGCCATTATCAACATCCATGGGCTATGGATCTCCTCATCCCGGGAGACGCTACCATTAG
AA sequence Show only first row Show all	>Lus10003745 pacid=23169627 polypeptide=Lus10003745 locus=Lus10003745.g ID=Lus10003745.BGIv1.0 annot-version=v1.0 MSNISPNGRFRRIITEWDKRDLLGRGSFGSVYEGISHDGFFFAIKEVSLLDQGSQGRQSVYQLEQEIALLSQFEHENIVQYYGTDKDASHLYIFLELVTK GSLLSLYQTYPLRDSQVSAYTRQILHGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNGKSQGYGLPADVWS LGCTVLEMLTRQIPYSDLENPMTALFKIGRGIPPTVSESLSRDARDFILKCLQVDAADRPTAAQLLDHPFVQRPLSTSMGYGSPHPGRRYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	0	1
AT2G25605			unknown protein		Lus10008087 [exp]	1.4	0.8412
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	1.7	0.8710
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	12.0	0.7591
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	16.9	0.8197
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	17.0	0.8233
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	19.3	0.7883
AT1G23770			F-box family protein (.1)		Lus10006138 [exp]	20.4	0.7971
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	23.6	0.8215
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10013851 [exp]	25.8	0.7403
AT1G56130			Leucine-rich repeat transmembr...		Lus10031199 [exp]	29.0	0.7745

Compare expression of checked genes

Lus10003745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.