Plant FIBer expression Database

Lus10003747 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64790 342 / 3e-108 ILA ILITYHIA (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003101
[exp]
373 / 4e-120 AT1G64790 2349 / 0.0 ILITYHIA (.1.2)
Lus10004767
[exp]
373 / 4e-119 AT1G64790 3557 / 0.0 ILITYHIA (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G024200
[exp]
351 / 2e-111 AT1G64790 3726 / 0.0 ILITYHIA (.1.2)
PFAM info
Representative CDS sequence
>Lus10003747 pacid=23169621 polypeptide=Lus10003747 locus=Lus10003747.g ID=Lus10003747.BGIv1.0 annot-version=v1.0
ATGGCGACTCGCGAGGGTCTTGAGGATAGAGCTTGGCGTACAAAAGAGAGCAGTGTCCAACTACTTGGTGCAATGGCATACTGTGCTCCTCAGCGGCTCT
CTCAGTGCCTTCCAGCTATAGTGCCTAAACTGACACAGGTATTGACTGATACACACCCCAAAGTTCAGACGGCTGGACAAACCGCATTACAGCAGACTAC
ATTTGTTAATTCAATTGATGCGCCTTCACTTGCACTGGTACCTATTGTTCATAGAGGGCTGAGGGAGAGGAGTGCAGAAACCAAAAAGAAAGCTGCACAG
ATTGTTGGGAACATGTGTTCATTGGTCACGGAACCTAGGGATATGATTCCTTACATTGGTTTGCTTCTTCCTGAAGTGAAAAAGGTTCTTGTAGATCCAA
TTCCTGAAGTTGGATCAGTTGCAGCACGGGCACTTGGATCTCTTATCAGAGGGATGGGTGAAGAGAAATTCCCAGATCTTGTTCCTTGGTTGTTTGACAC
TCTTAAATCTGATGGTAGCAATGTTGACAGATCTGGGGCTGCTCAAGGGTTGAGTGAGGTTTTGGCTGCACTTGGAGTGGATTACTTTGAACGTGCACTT
CCTGATATTGTTCGGAGCTGTTCTCATCCAAAGGCTTCTGTGCGTGACGCTATTCAAGGTGTGTGGACAGTACTTAAGTCTCTTCTTTGCTAA
AA sequence
>Lus10003747 pacid=23169621 polypeptide=Lus10003747 locus=Lus10003747.g ID=Lus10003747.BGIv1.0 annot-version=v1.0
MATREGLEDRAWRTKESSVQLLGAMAYCAPQRLSQCLPAIVPKLTQVLTDTHPKVQTAGQTALQQTTFVNSIDAPSLALVPIVHRGLRERSAETKKKAAQ
IVGNMCSLVTEPRDMIPYIGLLLPEVKKVLVDPIPEVGSVAARALGSLIRGMGEEKFPDLVPWLFDTLKSDGSNVDRSGAAQGLSEVLAALGVDYFERAL
PDIVRSCSHPKASVRDAIQGVWTVLKSLLC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64790 ILA ILITYHIA (.1.2) Lus10003747
[exp]
0 1
AT5G49150 GEX2, ATGEX2 gamete expressed 2 (.1) Lus10025556
[exp]
1.0 0.8823
AT3G16840 P-loop containing nucleoside t... Lus10023706
[exp]
3.5 0.8617
AT3G49990 unknown protein Lus10015447
[exp]
6.3 0.8380
AT2G02750 Pentatricopeptide repeat (PPR)... Lus10000073
[exp]
6.7 0.8554
Lus10019215
[exp]
7.9 0.8357
AT3G01460 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.... Lus10030865
[exp]
8.1 0.8253
AT4G18750 DOT4 DEFECTIVELY ORGANIZED TRIBUTAR... Lus10023710
[exp]
9.2 0.8546
AT4G35130 Tetratricopeptide repeat (TPR)... Lus10003233
[exp]
10.4 0.8249
AT2G27590 S-adenosyl-L-methionine-depend... Lus10020593
[exp]
15.6 0.7756
AT5G36930 Disease resistance protein (TI... Lus10042165
[exp]
15.7 0.8487

Lus10003747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.