Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03430 84 / 5e-18 Ankyrin repeat family protein (.1) AT2G14255 76 / 2e-14 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G20350 74 / 7e-14 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G14230 74 / 8e-14 unknown protein AT2G31820 71 / 1e-12 Ankyrin repeat family protein (.1) AT4G03500 70 / 1e-12 Ankyrin repeat family protein (.1) AT5G60070 70 / 2e-12 ankyrin repeat family protein (.1) AT2G28840 69 / 2e-12 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G57740 69 / 3e-12 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G37500 69 / 3e-12 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028039 [exp] 437 / 2e-152 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10020272 [exp] 164 / 1e-44 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 153 / 1e-41 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10007432 [exp] 93 / 1e-20 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10020505 [exp] 78 / 3e-15 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10016561 [exp] 77 / 8e-15 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10036990 [exp] 77 / 1e-14 AT5G14230 510 / 5e-174 unknown protein Lus10037694 [exp] 75 / 7e-14 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 74 / 1e-13 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213200 [exp] 444 / 4e-153 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 156 / 6e-42 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 116 / 4e-28 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 85 / 2e-18 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G287000 [exp] 84 / 6e-17 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G333600 [exp] 81 / 4e-16 AT5G14230 975 / 0.0 unknown protein Potri.012G113800 [exp] 75 / 2e-14 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 75 / 3e-14 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.006G061800 [exp] 75 / 4e-14 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.009G030000 [exp] 73 / 9e-14 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10003748 pacid=23169644 polypeptide=Lus10003748 locus=Lus10003748.g ID=Lus10003748.BGIv1.0 annot-version=v1.0 ATGGATAGACTGGTAAGAACAGAGGTCAAAGAAGTGGAGATCATCTACAAGAAAGGCCAGAAATGCACCGCAACCTTCAAGATCACCAACCTTATGCACA CTATGTCCGTAGCAATCTCTTTGTCAACCACCACCACCTTCACAAACTCTTCTTCTTCAGTTTTCTCCTTCTCCCACCCTCTGTCGATCATATCTCCACA ATCCACCGTCTCCTACACCGTCGTTCTATCTTCCTCCTCCGACGTCCCTCCGCCTCTCTCCAGCACCATCTCCGTCAGCTCCGCCATGCTCCCCACAGGA AAGGCCACCGCCGATGACCTCCGCAAGCTGTTCTCCGTCCCCGGGAGACATGTCTTCCGCGACGCGGTTATTCCGATCGCCGTCGTCGGTCATCAAGTCG CTGAGCGGATTGTCTCCGATTGTGGTGACGTGTACTCTTCTAAGTGTTTCGAGAAGGCTGTGAGTCGGTGCTCTGTTAGCCAGCTTAACGGTTTGCTCAG ATCGGCGGTTGGTTCCGGTAACGCTGATTTCGTACGGATATTGATCGAGAAGGGTGGGGATTTGAACCGGAGAGACTCTCAGGGGCGGTCGTTGTTATCG TTAGCTGTGAAAGGCGGCCATGTCGATGTGGTGAAGCTTCTGACCGATTCCGGATGCCGTGGCATCGTCGGCTCCGATTCCTGTCTCCACGACGCTGCGG CGGCGAACAGAGTCGACATCCTGCAGATTCTCACTGTCAATTTCAGATGTATCGATATGAACTCGACCGATTCGAGCGGGAGAACTCCAATCCACTTGGC GGCGATCAACGGACACGAGAAGGCGATCCGGTTCATCTCCTTTGCAGGAGGAGACTCAGATTTGGCGGATAAGAAAGGATTTACTCCGCTCCACCTTGCG GCGGAGAAAGGCCACCTGAAGGCAACGAAGTGCCTTATGGAAACTTCGATCTACGCCAAACAGGCGGTGAACAAGGCAGAGAAGACGCCGTATGATCTTG CGGTGGAGAACGGCCACTGCGGGGAGCTCTGCGAGTTGCTGTCCCCAATCGGAGACGAGCTGCAGAGGAGATCCGTTACCGGAGATGCAGAAGGAGTGAG GAGGTGTTTGGGAGAAGGAGCGGAGGTGAACGTGAGGGATCAGAACGGGTGGTCGCCGTTACACAGGGCAGCGTTCAAGGGGAAAGCAGAGAGCGTTAAA GTGCTGTTGGGGAAAGGAGCGGAGGTGGACGCGGTGGACGGAGATGGATACACGCCGTTGCATTGCGCGGTGGAGGCAGGACAGCTGAAAGTGGCGGTGA TGTTGATCGGACATGGAGCTAAAGTGAGCTTGAAAGGGGTTAAGGGAGGGTTTCCGTTCGGATTGAGTCTGAAAAACTATCCGGCTCGCGTTATTGATCT GTGCGAAGAGCAGAAGAGATGA
AA sequence Show only first row Show all	>Lus10003748 pacid=23169644 polypeptide=Lus10003748 locus=Lus10003748.g ID=Lus10003748.BGIv1.0 annot-version=v1.0 MDRLVRTEVKEVEIIYKKGQKCTATFKITNLMHTMSVAISLSTTTTFTNSSSSVFSFSHPLSIISPQSTVSYTVVLSSSSDVPPPLSSTISVSSAMLPTG KATADDLRKLFSVPGRHVFRDAVIPIAVVGHQVAERIVSDCGDVYSSKCFEKAVSRCSVSQLNGLLRSAVGSGNADFVRILIEKGGDLNRRDSQGRSLLS LAVKGGHVDVVKLLTDSGCRGIVGSDSCLHDAAAANRVDILQILTVNFRCIDMNSTDSSGRTPIHLAAINGHEKAIRFISFAGGDSDLADKKGFTPLHLA AEKGHLKATKCLMETSIYAKQAVNKAEKTPYDLAVENGHCGELCELLSPIGDELQRRSVTGDAEGVRRCLGEGAEVNVRDQNGWSPLHRAAFKGKAESVK VLLGKGAEVDAVDGDGYTPLHCAVEAGQLKVAVMLIGHGAKVSLKGVKGGFPFGLSLKNYPARVIDLCEEQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	2.4	0.8720
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	3.5	0.8679
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	4.6	0.8897
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	5.3	0.8529
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	6.0	0.8338
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	6.3	0.8223
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	6.3	0.8357
AT1G23050			hydroxyproline-rich glycoprote...		Lus10043476 [exp]	6.7	0.8003
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	8.4	0.8660
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	9.8	0.8706

Compare expression of checked genes

Lus10003748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.