Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54690 240 / 5e-83 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT1G08880 240 / 6e-83 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT5G54640 199 / 7e-67 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT1G51060 198 / 1e-66 HTA10 histone H2A 10 (.1) AT4G27230 197 / 2e-66 HTA2 histone H2A 2 (.1.2) AT3G20670 196 / 7e-66 HTA13 histone H2A 13 (.1) AT5G59870 184 / 8e-61 HTA6 histone H2A 6 (.1) AT5G02560 177 / 4e-58 HTA12 histone H2A 12 (.1.2) AT5G27670 174 / 1e-56 HTA7 histone H2A 7 (.1) AT2G38810 126 / 4e-38 HTA8 histone H2A 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028044 [exp] 269 / 2e-94 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Lus10039691 [exp] 225 / 5e-77 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10027154 [exp] 225 / 5e-77 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10002253 [exp] 223 / 3e-76 AT1G54690 244 / 9e-85 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10042960 [exp] 198 / 1e-66 AT1G51060 243 / 2e-84 histone H2A 10 (.1) Lus10032464 [exp] 197 / 6e-66 AT1G51060 240 / 2e-83 histone H2A 10 (.1) Lus10005444 [exp] 183 / 2e-60 AT5G02560 234 / 2e-80 histone H2A 12 (.1.2) Lus10004945 [exp] 182 / 4e-60 AT5G02560 233 / 5e-80 histone H2A 12 (.1.2) Lus10023754 [exp] 180 / 7e-59 AT5G02560 233 / 2e-79 histone H2A 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028900 [exp] 234 / 1e-80 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040800 [exp] 233 / 2e-80 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040700 [exp] 227 / 7e-78 AT1G08880 183 / 2e-60 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.013G028800 [exp] 213 / 3e-72 AT1G08880 190 / 2e-63 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.004G031300 [exp] 196 / 5e-66 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Potri.011G131400 [exp] 196 / 8e-66 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.001G415700 [exp] 196 / 2e-65 AT1G51060 174 / 1e-56 histone H2A 10 (.1) Potri.006G082300 [exp] 178 / 2e-58 AT5G02560 143 / 2e-44 histone H2A 12 (.1.2) Potri.005G026500 [exp] 175 / 3e-57 AT5G27670 145 / 2e-45 histone H2A 7 (.1) Potri.013G018200 [exp] 172 / 2e-56 AT5G27670 160 / 4e-51 histone H2A 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10003750 pacid=23169638 polypeptide=Lus10003750 locus=Lus10003750.g ID=Lus10003750.BGIv1.0 annot-version=v1.0 ATGAGTTCAGTCGCCGCCGCTGGTTTAGCCAAGTCCGGCAGAGGCAAGCCGAAATCCAAGGCTGTCTCTAGGTCTCAGAAAGCCGGTCTACAGTTCCCCG TCGGCCGCATAGCTCGTTTCCTAAAGAGAGGTAGATACGCTGAGCGCGTTGGATCTGGGTCCCCTGTCTACCTCTCCGCCGTCATGGAGTATCTCGCCGC TGAGGTTTTGGAGCTGGCTGGAAACGCTGCGAGGGATAACAAGAAGACAAGGATCGTTCCGAGGCACATTCAGCTGGCTGTGAGGAACGACGAGGAGTTG AGCAAGCTGCTCGGAGGTGTCACCATTGCTAACGGAGGCGTGTTGCCGAAGATTCACCAGAGTTTGCTGCCGAAGAAAGCTGGGAAAGATAAGGGAGAGA TCGGCTCTGCTTCCCAAGAGTTTTGA
AA sequence Show only first row Show all	>Lus10003750 pacid=23169638 polypeptide=Lus10003750 locus=Lus10003750.g ID=Lus10003750.BGIv1.0 annot-version=v1.0 MSSVAAAGLAKSGRGKPKSKAVSRSQKAGLQFPVGRIARFLKRGRYAERVGSGSPVYLSAVMEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEEL SKLLGGVTIANGGVLPKIHQSLLPKKAGKDKGEIGSASQEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	0	1
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	1.0	0.9750
AT5G19340			unknown protein		Lus10041215 [exp]	1.4	0.9627
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	2.4	0.9595
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	5.7	0.9322
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	6.0	0.9533
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	6.6	0.9389
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	7.4	0.9483
AT2G37960			unknown protein		Lus10021116 [exp]	11.0	0.9476
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	11.0	0.9393
AT3G06868			unknown protein		Lus10024784 [exp]	12.5	0.9384

Compare expression of checked genes

Lus10003750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.