Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 105 / 3e-26 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 64 / 2e-11 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 62 / 8e-11 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 58 / 1e-09 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 54 / 4e-08 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 50 / 6e-07 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 46 / 2e-05 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 46 / 2e-05 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT3G53880 43 / 0.0002 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028045 [exp] 481 / 5e-173 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 187 / 1e-56 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023674 [exp] 109 / 1e-27 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10011751 [exp] 108 / 3e-27 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10041185 [exp] 64 / 2e-11 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 59 / 7e-10 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 59 / 8e-10 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10012456 [exp] 56 / 1e-08 AT4G33670 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 53 / 7e-08 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042100 [exp] 421 / 5e-149 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 181 / 1e-54 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 114 / 2e-29 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.002G055500 [exp] 69 / 5e-13 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 66 / 4e-12 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 65 / 9e-12 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 64 / 2e-11 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 61 / 2e-10 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.009G081300 [exp] 60 / 4e-10 AT4G33670 529 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G287100 [exp] 59 / 6e-10 AT4G33670 518 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10003751 pacid=23169626 polypeptide=Lus10003751 locus=Lus10003751.g ID=Lus10003751.BGIv1.0 annot-version=v1.0 ATGGAACTGAAGTTGCCTGAATCATTTCGCCTTCTCGACGAAGCTTTTCAAGCTGGAATCAACTTCTTTGACTCCGCTGAAATGTATCCGGTGCCGCAAC GAGTTGAGAATCATGGAAGAAGCGAGGAGTACTTAGGCCTCTGGATTAAAGATAGGAAGATTCCCAGGGACCGAGTTGTGGTTTCAACCAAAGTTGCAGG GCCTTCTGGGCAGATGACATGGATTCGAGGAGGGCCAACTTGTTTGGACGCTAAGAATATTATTGAAGCTGTTGATAGTAGCTTAAAACGAATGCAGTTG GACTACATTGATCTCTATCAAATTCATTGGCCCGATCGATATGTTCCGATGTTTGGAGAAACCGAGTATGACCCTACTCGCCAGTTCAATTCAATTTGCA TGGAAGAACAACTTGGTGCCCTTGGCAAAGCTGTGATTCGATGTTCTCGTACCGTGTTCCTAATAATCAGCTTATTAGCATACAGTCCCCTTGCAATGGG GATACTATCTGGGAAGTACTTTGAACCTGCTGGAGCTCCACCAGATGCTCGTTTCAATATGTTTGAAGGTATGTATACAGAAGGCGAGTCGAGGTACAAC CTCCATAGTAACAACATACGAACAGCTGCTAAGGAATACATCAATATAGCCCATGAATTTGCTATACATCCTGTAACTCTTGCAATTGCATTTGTCTTGG GACACCCTCTAGTAGCAAGTGCCGTGTTTGGTGCAACCAAGTCATGGCAATTGCAGGAGGTACTGAGAGCATGCGACACTCAATTCACACCAGACATTTT AGCAGAAGTCAACAAGGTCCATTCCGGACTCCCAAATCCTTGTCCTTGA
AA sequence Show only first row Show all	>Lus10003751 pacid=23169626 polypeptide=Lus10003751 locus=Lus10003751.g ID=Lus10003751.BGIv1.0 annot-version=v1.0 MELKLPESFRLLDEAFQAGINFFDSAEMYPVPQRVENHGRSEEYLGLWIKDRKIPRDRVVVSTKVAGPSGQMTWIRGGPTCLDAKNIIEAVDSSLKRMQL DYIDLYQIHWPDRYVPMFGETEYDPTRQFNSICMEEQLGALGKAVIRCSRTVFLIISLLAYSPLAMGILSGKYFEPAGAPPDARFNMFEGMYTEGESRYN LHSNNIRTAAKEYINIAHEFAIHPVTLAIAFVLGHPLVASAVFGATKSWQLQEVLRACDTQFTPDILAEVNKVHSGLPNPCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10037311 [exp]	1.0	0.9376
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	3.7	0.9001
AT5G05180			unknown protein		Lus10030507 [exp]	4.9	0.8568
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	7.1	0.8356
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	7.7	0.8573
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	9.5	0.8536
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	11.8	0.8605
AT3G13275			unknown protein		Lus10007090 [exp]	12.4	0.8407
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	13.6	0.8641
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	14.7	0.7658

Compare expression of checked genes

Lus10003751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.