Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01660 41 / 0.0001 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 40 / 0.0002 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028046 [exp] 243 / 4e-84 AT1G70690 41 / 1e-04 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10008314 [exp] 108 / 4e-31 ND / Lus10035753 [exp] 110 / 8e-31 ND / Lus10008311 [exp] 105 / 1e-29 ND 35 / 0.008 Lus10010116 [exp] 100 / 1e-27 ND 36 / 0.007 Lus10028053 [exp] 105 / 2e-27 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10012621 [exp] 100 / 2e-27 ND 38 / 0.002 Lus10028050 [exp] 99 / 5e-27 ND 36 / 0.004 Lus10029618 [exp] 98 / 8e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133500 [exp] 40 / 0.0002 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 39 / 0.0005 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003752 pacid=23169655 polypeptide=Lus10003752 locus=Lus10003752.g ID=Lus10003752.BGIv1.0 annot-version=v1.0 ATGGAGCACTGCAACTCAAAATCAACAACAGCAGCAATCCTTATCCTCCTCGGAGTACTAGCAGTACTAGTCAACTGCAAAGTGGGTCCGGACATCAGCA TCGTGAGAGGGCCCACATGCACCGGAATATCGAAGAACAACGGCTACACCAAGAGTGTGGCGACTCTCCTCGGGACCCTAGTCAACGAAACCAAAAACGT GCACAGGGAGACGGTCCACCAAGTTTACAGGTACTCCCGCCAGATCCCGGACTCCGAACCAGGGTCGGTGACCGGGACCGCGGTTTGTTCGGGTGAGTTG GGTAAATCGGAATGCTGGGAGTGTTTGGTCCATGCACAAGGGAAGCTGACTACGGGATGTGTTGATCCGGTTAAGGGCAGTGTCAAGTTGCAGGATTGTT CCATTTGGTTCGACAAAAAGTGTTGA
AA sequence Show only first row Show all	>Lus10003752 pacid=23169655 polypeptide=Lus10003752 locus=Lus10003752.g ID=Lus10003752.BGIv1.0 annot-version=v1.0 MEHCNSKSTTAAILILLGVLAVLVNCKVGPDISIVRGPTCTGISKNNGYTKSVATLLGTLVNETKNVHRETVHQVYRYSRQIPDSEPGSVTGTAVCSGEL GKSECWECLVHAQGKLTTGCVDPVKGSVKLQDCSIWFDKKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10003752 [exp]	0	1
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	2.6	0.8730
					Lus10021760 [exp]	6.0	0.7526
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	6.6	0.7802
					Lus10003753 [exp]	8.1	0.7802
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035485 [exp]	8.9	0.7243
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	9.4	0.7802
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	10.5	0.7802
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	15.2	0.7226
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	17.7	0.7426
AT2G37370			unknown protein		Lus10009063 [exp]	24.6	0.7238

Compare expression of checked genes

Lus10003752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.