Plant FIBer expression Database

Lus10003753 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003755
[exp]
178 / 1e-58 ND 37 / 0.002
Lus10003754
[exp]
173 / 7e-57 AT1G04520 39 / 3e-04 plasmodesmata-located protein 2 (.1)
Lus10008314
[exp]
139 / 3e-43 ND /
Lus10029617
[exp]
138 / 6e-43 ND /
Lus10032770
[exp]
132 / 1e-40 ND /
Lus10029619
[exp]
130 / 7e-40 ND /
Lus10032788
[exp]
130 / 1e-39 ND 36 / 0.007
Lus10042684
[exp]
129 / 1e-39 ND /
Lus10035753
[exp]
130 / 5e-39 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G208400
[exp]
39 / 0.0002 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01657 Stress-antifung Salt stress response/antifungal
Representative CDS sequence
>Lus10003753 pacid=23169643 polypeptide=Lus10003753 locus=Lus10003753.g ID=Lus10003753.BGIv1.0 annot-version=v1.0
ATGGCGGTAGCCACGATCGTGCTCATCTCTATTCTAAGCATGGTTCACGGCCAAGACACGAGACTCATCAACGGACCCCAGTGCGCGAAGAAATGCGACG
ACAAGGTGTACAACGACAACGTTGCGCGTCTCCTAGGCCACTTTGTTCACGAGACCAAGAACGTGAAGAGGAAGAAACACGAGAATTACGCGTACTATCA
CAACTTCCCCAACAAGGATCTCGGATCGGTCACTGGAGGGGTCATCTGTGACGGACACCTTTGGGGATGGCAATGCGAGAGCTGTCTTAAGACGGCGAGG
AAGAAGATCTACAGAGGGTGTGGATCAACGACTGAAGCTAGCATCGAACTCCAAGATTGCTCGATGTGGTTCGCGAAGATCGAACGTAAAGTTGAATAG
AA sequence
>Lus10003753 pacid=23169643 polypeptide=Lus10003753 locus=Lus10003753.g ID=Lus10003753.BGIv1.0 annot-version=v1.0
MAVATIVLISILSMVHGQDTRLINGPQCAKKCDDKVYNDNVARLLGHFVHETKNVKRKKHENYAYYHNFPNKDLGSVTGGVICDGHLWGWQCESCLKTAR
KKIYRGCGSTTEASIELQDCSMWFAKIERKVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003753
[exp]
0 1
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10000682
[exp]
1.0 1.0000
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Lus10032339
[exp]
1.4 1.0000
AT3G27470 Protein of unknown function (D... Lus10035228
[exp]
2.0 0.9631
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10024462
[exp]
2.2 0.9363
AT4G20040 Pectin lyase-like superfamily ... Lus10008700
[exp]
2.4 1.0000
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10010776
[exp]
4.6 0.9312
AT2G37370 unknown protein Lus10009063
[exp]
5.5 0.9356
Lus10021760
[exp]
6.3 0.7867
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Lus10035485
[exp]
7.5 0.7896
AT1G70690 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN ... Lus10003752
[exp]
8.1 0.7802

Lus10003753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.