Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 220 / 5e-69 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 216 / 2e-67 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G21910 214 / 6e-67 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G39490 214 / 1e-66 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT1G57750 201 / 9e-62 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39500 197 / 2e-60 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT4G32170 197 / 3e-60 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G65340 196 / 1e-59 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT1G47620 193 / 8e-59 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT3G26125 194 / 1e-58 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028047 [exp] 416 / 1e-145 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 367 / 1e-126 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 363 / 4e-121 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025677 [exp] 294 / 6e-98 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10015307 [exp] 283 / 1e-97 AT2G23180 219 / 6e-69 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10018161 [exp] 246 / 2e-83 AT4G39480 204 / 5e-64 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) Lus10022277 [exp] 254 / 2e-82 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 250 / 1e-80 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 248 / 9e-80 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 249 / 2e-80 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 241 / 6e-77 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 238 / 5e-76 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 236 / 4e-75 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 215 / 2e-67 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G125300 [exp] 202 / 1e-62 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G094500 [exp] 199 / 4e-61 AT1G47620 372 / 7e-124 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) Potri.015G087000 [exp] 195 / 2e-60 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.005G092200 [exp] 197 / 1e-59 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 193 / 2e-58 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10003756 pacid=23169625 polypeptide=Lus10003756 locus=Lus10003756.g ID=Lus10003756.BGIv1.0 annot-version=v1.0 ATGGCGGGAGATCGAGAACAGAACGAGTCGAGGGAAAGCAGTCGGATAGGAAAATCTAACAGGCTCATGAGAGATATGGCCTTCAACATGATCGCGGCAG GGAGAGACACGATCTCCATCAATTTATCATGGCTGCTCTGGCTCAATGTTTCACATTCCAACGACGAGGTGAAAATTCTCAACGAAATCGAGGCGAATCT AGGCAGCAAAAATTGGAGGCTCTTCAGTGACGAAGAGATGAACAAGATGGTGTACTTGCATGCAGCCGTGTGCGAGGCGCTGAGGCTTTACCCTCCGCTT GCATTTGAGCATCGGACAACAGTAGAGGTAGAGGCACTGCCGAGCGGGCATTTCGTCGGGAAGAACACAACGATTTTGTTTTCGTTGTATTCAATGGGGA AGATGGAGGATATTTGGGGGAAAGATTGTGGGGAGTTTAAGCCGGAGAGGTGGATTAGCGAAGAAGGGGATAAGATTGTTCACGTTCCGTCGTATAAGTT CTCAGCATTTTTAACAGGACCTAGGGCTTGCTTGGGGAAGAAGATTGCTTTCTTGTATGTGAAGCAACTGGCGAGTGCTTTGCTTTATAACTACAAGGTG GAAGCGGTGGAAGGGCGTCTTGTTGCGCCTGCAGTTTCGTTCATGTTGTTGATGAAACACGGTTTGAAAGTTCGAATTTCGAGAAGAAGATAA
AA sequence Show only first row Show all	>Lus10003756 pacid=23169625 polypeptide=Lus10003756 locus=Lus10003756.g ID=Lus10003756.BGIv1.0 annot-version=v1.0 MAGDREQNESRESSRIGKSNRLMRDMAFNMIAAGRDTISINLSWLLWLNVSHSNDEVKILNEIEANLGSKNWRLFSDEEMNKMVYLHAAVCEALRLYPPL AFEHRTTVEVEALPSGHFVGKNTTILFSLYSMGKMEDIWGKDCGEFKPERWISEEGDKIVHVPSYKFSAFLTGPRACLGKKIAFLYVKQLASALLYNYKV EAVEGRLVAPAVSFMLLMKHGLKVRISRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003756 [exp]	0	1
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037099 [exp]	1.0	0.9724
AT2G30300			Major facilitator superfamily ...		Lus10015470 [exp]	1.4	0.9064
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	2.4	0.8612
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	11.0	0.7882
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	12.2	0.7882
					Lus10010383 [exp]	13.4	0.7882
					Lus10000380 [exp]	14.5	0.7882
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	14.8	0.6769
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	15.5	0.7873
					Lus10009632 [exp]	16.4	0.7852

Compare expression of checked genes

Lus10003756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.