Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028048 [exp] 263 / 7e-92 ND / Lus10010117 [exp] 236 / 2e-81 ND 39 / 4e-04 Lus10012621 [exp] 191 / 6e-63 ND 38 / 0.002 Lus10010116 [exp] 182 / 7e-60 ND 36 / 0.007 Lus10014738 [exp] 166 / 2e-53 ND / Lus10003758 [exp] 164 / 2e-51 ND / Lus10002731 [exp] 148 / 9e-47 ND / Lus10008311 [exp] 103 / 8e-29 ND 35 / 0.008 Lus10008314 [exp] 103 / 1e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120700 [exp] 39 / 0.0005 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120500 [exp] 39 / 0.0005 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.005G208400 [exp] 38 / 0.0006 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 39 / 0.001 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10003757 pacid=23169624 polypeptide=Lus10003757 locus=Lus10003757.g ID=Lus10003757.BGIv1.0 annot-version=v1.0 ATGATCTCACACCTTACATTCAAACTCAAAACCCAAAACGCTACAGAAAGAATGTACTCCCCGTCAAAACTATACGCGGCAGCCATTATGTTACTGTGTA TAGTTGTTGATGGAAAACTCTCCGACACGACCATCCTCAACGGACCTGATTGTACGGGGAAATCAACGACCAGAGCGTACAATTACAACGTTGAGGGTCT CATGGCCAGCTTCATAAAGGACACACCGAAAAGTGAAAGGAATATATTCGGGGACAGACAAATGAATCATAGCTACCCGAATCGAAACCCGGGGTCGCCT TATGGAGTCTCCACGTGCTACCAAGACCTTGGGAAGTACGATTGTTGGAACTGTCTCGTCTCCGCTAAGGGTAAACTCGAAAAGGGTTGCTTGCATCCCA TTGCTGCTACCGTAAGACTCCAGGACTGCTCCATCACTTTTAACATTACCGTCGGAGTGCTTTGA
AA sequence Show only first row Show all	>Lus10003757 pacid=23169624 polypeptide=Lus10003757 locus=Lus10003757.g ID=Lus10003757.BGIv1.0 annot-version=v1.0 MISHLTFKLKTQNATERMYSPSKLYAAAIMLLCIVVDGKLSDTTILNGPDCTGKSTTRAYNYNVEGLMASFIKDTPKSERNIFGDRQMNHSYPNRNPGSP YGVSTCYQDLGKYDCWNCLVSAKGKLEKGCLHPIAATVRLQDCSITFNITVGVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003757 [exp]	0	1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10027845 [exp]	6.7	0.8695
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	8.3	0.8949
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	11.7	0.8942
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	14.6	0.8928
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	17.0	0.8913
AT3G19300			Protein kinase superfamily pro...		Lus10018096 [exp]	19.0	0.8913
					Lus10016887 [exp]	20.8	0.8913
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Lus10017726 [exp]	22.4	0.8913
					Lus10011636 [exp]	24.0	0.8913
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	25.5	0.8913

Compare expression of checked genes

Lus10003757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.