Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 219 / 6e-73 Ribosomal protein S8e family protein (.1) AT5G20290 209 / 1e-68 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025887 [exp] 222 / 2e-73 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10016587 [exp] 219 / 6e-72 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003171 [exp] 231 / 2e-71 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 228 / 3e-70 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110000 [exp] 227 / 6e-76 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 219 / 7e-73 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 218 / 4e-72 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.001G360500 [exp] 217 / 8e-72 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Lus10003761 pacid=23180850 polypeptide=Lus10003761 locus=Lus10003761.g ID=Lus10003761.BGIv1.0 annot-version=v1.0 ATGGGGATATCTCGTGATTGGATGCACAAGAGGCGTGCCACCGGAGGCAAAAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGATGAGAAGGCAACCTG CAAACACAAAACTATCGAGTAATAAGACAGTTAGGAGAGTTAGGGCTCGAGGTGGGAATGTGAAGTGGCGTGCTTTGAGGCTTGACTCAGGAAGCTTCTC ATGGGGTAGTGAGGCAGAGTCAAGGAAGACGGGACTTCTTGATGTTGTTGATGCTGCACCTTTTAAGCAGTGGTATCTCAATCACTATGGAGTTGACATT GGTCGCAAGAAGAAGAATCCTGCCAAGAAGGAAGGAGAGGAAGTTGAAGCTTCTGCTGCTGCTGCTACTGAAGAAGCAAAGAAAAGCAGCCACGTGACGA GAAAGCTGGAGAAGAGGCAGCAGCCAAGGCAGCTTGATCCACATATTGAGGAACAGTTCAGTGGTGGACGATTGTTGGCTTGCATTTCATCCCGCCCTGG CCAGTGTGACCATGCTGATGGCTACATCTTGGAGGACAAAGAATTGGAGTTCTACATGAAAAAGTTGCAGAAGAAGAAGGGCAAGGGAGCTGGAGCTGCC TAA
AA sequence Show only first row Show all	>Lus10003761 pacid=23180850 polypeptide=Lus10003761 locus=Lus10003761.g ID=Lus10003761.BGIv1.0 annot-version=v1.0 MGISRDWMHKRRATGGKKKAWRKKRKYEMRRQPANTKLSSNKTVRRVRARGGNVKWRALRLDSGSFSWGSEAESRKTGLLDVVDAAPFKQWYLNHYGVDI GRKKKNPAKKEGEEVEASAAAATEEAKKSSHVTRKLEKRQQPRQLDPHIEEQFSGGRLLACISSRPGQCDHADGYILEDKELEFYMKKLQKKKGKGAGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59240			Ribosomal protein S8e family p...		Lus10003761 [exp]	0	1
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	3.2	0.8341
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	5.5	0.8297
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	10.5	0.8221
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	16.1	0.8080
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	16.2	0.8092
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	17.9	0.8042
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	19.6	0.8073
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	20.1	0.8158
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	22.0	0.8100
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	28.3	0.7938

Compare expression of checked genes

Lus10003761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.