Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50575 285 / 8e-97 Putative lysine decarboxylase family protein (.1) AT5G06300 49 / 5e-07 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G37210 49 / 9e-07 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 48 / 1e-06 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G35990 47 / 2e-06 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT2G28305 47 / 3e-06 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT4G35190 45 / 1e-05 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G03270 45 / 2e-05 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G11950 42 / 0.0001 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016588 [exp] 431 / 4e-154 AT1G50575 330 / 3e-113 Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 50 / 3e-07 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 50 / 4e-07 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 49 / 7e-07 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 49 / 1e-06 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 49 / 1e-06 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10004222 [exp] 47 / 2e-06 AT5G06300 293 / 1e-102 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 47 / 3e-06 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 47 / 3e-06 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180300 [exp] 314 / 3e-108 AT1G50575 361 / 1e-125 Putative lysine decarboxylase family protein (.1) Potri.016G072000 [exp] 49 / 5e-07 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.006G127400 [exp] 49 / 7e-07 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.005G237600 [exp] 49 / 9e-07 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 48 / 1e-06 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 47 / 2e-06 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 47 / 2e-06 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G024000 [exp] 47 / 2e-06 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 47 / 3e-06 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 45 / 2e-05 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10003762 pacid=23180843 polypeptide=Lus10003762 locus=Lus10003762.g ID=Lus10003762.BGIv1.0 annot-version=v1.0 ATGAGTTTTTCGACAGCGAGCATCTTGGGTTCTCACGTATTGGCGAGGAAATTCCACGTGGAACTAAGCGAGTTGTTTCAGTCATCGAGTGGAAGATGGA GATTCAGTGTAGAACTGAAACCTCGCCGGAGGAAACAATTGATGTGCAACAAAGGTGAACTATCAGTTGATTTTGAAGAGAGGACGAGTCCCTACGAGAT TGCTAAGCTTTTGGACTGCACTTCATGGACAGGCGCTGGTCCAGGTCTAATGGATGCTGCTACCAAGGGCGCATTGCAGGCTGGAAAACCTGTTGGTGGG TTTAAGATAGGGAAAGAAGCTGGTGAATGGACCTCCTCAAACTTCCATCCTTACCTCCCACCACAAACATATCTTACATGCAGGTTCTTCTCTGCGAGGA AACACGGGCTGGTAGATGCTGCAGTCAGGATGAAGGCTTCTGATCGCACTGCTTTAATTGCACTCCCAGGTGGAATTGGTACTCTAGATGAATTGTTTGA GATATTAGCATTGGTTCAGCTGGAAAGGATTGGATCACAGTTTCCGGTGCCAATTCTAGTGATGAATTACGACTCTTTTTACAAGAATCTGCTAGAGTTT CTAGATGATTGTGAGTACTGGGGCACTGTTTCAAAAGGAGAGGTTTCATCACTGTGGAGGATATGCCAGAATAACTCGGAAGCTCTTGCTTACTTGGCTG ATTTCTACCATCTCGCTTGGGATGGCATATGA
AA sequence Show only first row Show all	>Lus10003762 pacid=23180843 polypeptide=Lus10003762 locus=Lus10003762.g ID=Lus10003762.BGIv1.0 annot-version=v1.0 MSFSTASILGSHVLARKFHVELSELFQSSSGRWRFSVELKPRRRKQLMCNKGELSVDFEERTSPYEIAKLLDCTSWTGAGPGLMDAATKGALQAGKPVGG FKIGKEAGEWTSSNFHPYLPPQTYLTCRFFSARKHGLVDAAVRMKASDRTALIALPGGIGTLDELFEILALVQLERIGSQFPVPILVMNYDSFYKNLLEF LDDCEYWGTVSKGEVSSLWRICQNNSEALAYLADFYHLAWDGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	0	1
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	1.7	0.9360
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	4.0	0.9166
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	4.2	0.9150
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	6.5	0.8975
					Lus10037282 [exp]	7.2	0.8690
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10009638 [exp]	7.3	0.9115
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10019623 [exp]	7.3	0.8948
					Lus10014678 [exp]	7.4	0.9163
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	7.7	0.8961
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	7.9	0.9124

Compare expression of checked genes

Lus10003762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.