Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55530 432 / 4e-150 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 399 / 2e-137 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G12300 199 / 1e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032578 [exp] 449 / 2e-157 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10016592 [exp] 326 / 4e-110 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 313 / 6e-105 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009692 [exp] 192 / 4e-57 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036036 [exp] 71 / 6e-13 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001346 [exp] 61 / 2e-10 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 52 / 1e-08 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G088400 [exp] 514 / 0 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 494 / 4e-174 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.009G070400 [exp] 283 / 1e-91 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 224 / 1e-68 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 47 / 2e-05 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 47 / 3e-05 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10003765 pacid=23180845 polypeptide=Lus10003765 locus=Lus10003765.g ID=Lus10003765.BGIv1.0 annot-version=v1.0 ATGGATTCTCCACAGTCTGTTGTGTCGCCATTCAAGAGTGCTGAGCCGGAGAAGCAGCATAAAACTATCGACTATTCTGCTAAGGAAGTTGCGAGGAACG CAACTTATGGAAATTTGGAGCAAGACTTCATTGGTGTGCTTGAGGTTTATGTACATCAAGCTCGTGACATCCATAACATATGCATCTACCACAAACAAGA TGTCTATGCTAAGATCTGCCTTACCAGTGATCCTGACAACACCGTCTCCACAAATACCATCAACGGTGGTGGGAGGAATCCGGTTTTCAATCAGAATCTG CAGATTAATGTCAAGACAGTTGACTGCTCCCTCAAATGTGAAATATTCATGATGAGTCGGGTCAAGAACTACCTTGAGGATCAGTTGTTGGGATTTGCTT TGGTGCCTTTGTCTCAAGTCGTTATGAAGAATGGTCAGTTGGAGAAAGACTTTGCTCTTTCTTCAACTGATCTCTTCCATTCTCCAGCTGGATATGTTCA GCTTTCCCTCTCGTATAGTGGTGCTTCCCCTGACGTAATGGCAATTCCTGCAATGCCTACTGCCGAAGCAACAGACAGGGTTATGCAGGATTCTGAGATA CATGAATCGGTCCCATCTGAACTCGAAAAGCTTGAATTCCCAGATCCGAATATTGTCAATGAAAACCAGATGATGGTTTCTGAGTACTTTGGGATGCCGT GTTCCAGTCTGGAATCTGAACCCTCTGAGAGCTTCATCTCCTCTGATGCTGACAACCATACTAGCACTACAGACAAGGGGACTAATGGAGTAGAAAGTTT CTCGACTGCTGCAGTTGATTGTATCCGAGCTATTCAGCTCGATTCTCCTCCAAGCAGTGCATCAACGAATGGAGTGGCATCTCCTTCAAACGGAGTGAGC TCTAACAACTCGGAGGCCCCAGTTGCTTCCAAAACTCAGTCTGAAGAACACAACTCCATTTGCAAAGAGTTAAAGAATGTAGATCATGTGGCTAATGGAG AAACCGATTCCTCAGCTGGCACACCCAAGGAGCAGGAGGAAGTTACAAAAAACCATGTTTTCAACGTCAACTTTGAGCCAGAGCAGAATGTAGTCCAGCA GGACATAGTGGACATGTACATGAAGAGCATGCAGCAATTCACTGAGTCATTGGCAAAGATGAAGCTTCCTCTAGAAATTGATAATAGCGGACCACCGAGT TCAGGAAGTTCAAACACCGAGCAAAAAACACCCTCATCAACCAAGGCAGGTTCTCGGGTCTTTTATGGGAGCAGGGCTTTCTTCTGA
AA sequence Show only first row Show all	>Lus10003765 pacid=23180845 polypeptide=Lus10003765 locus=Lus10003765.g ID=Lus10003765.BGIv1.0 annot-version=v1.0 MDSPQSVVSPFKSAEPEKQHKTIDYSAKEVARNATYGNLEQDFIGVLEVYVHQARDIHNICIYHKQDVYAKICLTSDPDNTVSTNTINGGGRNPVFNQNL QINVKTVDCSLKCEIFMMSRVKNYLEDQLLGFALVPLSQVVMKNGQLEKDFALSSTDLFHSPAGYVQLSLSYSGASPDVMAIPAMPTAEATDRVMQDSEI HESVPSELEKLEFPDPNIVNENQMMVSEYFGMPCSSLESEPSESFISSDADNHTSTTDKGTNGVESFSTAAVDCIRAIQLDSPPSSASTNGVASPSNGVS SNNSEAPVASKTQSEEHNSICKELKNVDHVANGETDSSAGTPKEQEEVTKNHVFNVNFEPEQNVVQQDIVDMYMKSMQQFTESLAKMKLPLEIDNSGPPS SGSSNTEQKTPSSTKAGSRVFYGSRAFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	0	1
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	5.8	0.9290
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	9.5	0.8993
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	9.8	0.8983
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10034407 [exp]	11.2	0.9020
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10026041 [exp]	14.5	0.9034
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	16.0	0.9087
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	16.7	0.9037
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	17.4	0.9039
AT3G15760			unknown protein		Lus10030098 [exp]	18.7	0.9042
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	19.8	0.8782

Compare expression of checked genes

Lus10003765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.