Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032975 [exp] 166 / 4e-54 ND 40 / 1e-04 Lus10039338 [exp] 144 / 1e-45 ND / Lus10006779 [exp] 141 / 2e-44 AT5G63920 42 / 2e-05 topoisomerase 3alpha (.1) Lus10039973 [exp] 122 / 4e-37 ND / Lus10037411 [exp] 94 / 5e-23 AT2G28450 874 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10005485 [exp] 64 / 2e-14 ND 34 / 0.007 Lus10027102 [exp] 45 / 6e-07 ND 39 / 3e-04 Lus10011688 [exp] 47 / 7e-07 ND / Lus10040117 [exp] 43 / 3e-05 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Lus10003766 pacid=23180854 polypeptide=Lus10003766 locus=Lus10003766.g ID=Lus10003766.BGIv1.0 annot-version=v1.0 ATGGGATCTAACAACAACGGATCTGGTGGTCAGACATTAGTGACCACCTCGATGGGATCGAGTTTAATTACGTGTTCCCACAACATGGAGGCCTTTCTAA AGACGGCGACTACTGCAAAGAATCGCGGTCAGACCTTCTTTCGATGCCCGTTCTGGAGGACTTTTGATTGCGGGTTCCTTGCATGGGAGTCTGATTGTTC CGGGTATGAACTAGAGGTTACAGTTCCCGACCAAGGCGTTGCACGGAGACTTGAAGAACCACCGACGAGCTTGCAGTTTGATTTGGTTTTACAGGAGATT AGGTGTGTTAGGAACAAGATTGAAGGGTTTGATAATAGAATCACTCTTGTTCTTGGTAATATGTGGGTCGTTGTTCTGTTGGTTGCTATTAGTTGCACAA TTCGTTAA
AA sequence Show only first row Show all	>Lus10003766 pacid=23180854 polypeptide=Lus10003766 locus=Lus10003766.g ID=Lus10003766.BGIv1.0 annot-version=v1.0 MGSNNNGSGGQTLVTTSMGSSLITCSHNMEAFLKTATTAKNRGQTFFRCPFWRTFDCGFLAWESDCSGYELEVTVPDQGVARRLEEPPTSLQFDLVLQEI RCVRNKIEGFDNRITLVLGNMWVVVLLVAISCTIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003766 [exp]	0	1
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10007683 [exp]	9.5	0.6914
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10040450 [exp]	19.3	0.6245
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	23.7	0.6801
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10012746 [exp]	41.2	0.6645
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022133 [exp]	47.9	0.6764
					Lus10010602 [exp]	51.2	0.6035
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	72.7	0.6646
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	131.0	0.6030
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10041391 [exp]	205.3	0.5983

Compare expression of checked genes

Lus10003766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.