Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55540 651 / 0 LOP1, TRN1 LOPPED 1, tornado 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016591 [exp] 452 / 2e-146 AT5G55540 1027 / 0.0 LOPPED 1, tornado 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361200 [exp] 805 / 0 AT5G55540 1900 / 0.0 LOPPED 1, tornado 1 (.1) Potri.008G193700 [exp] 44 / 0.0002 AT1G10510 813 / 0.0 embryo defective 2004, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003767 pacid=23180857 polypeptide=Lus10003767 locus=Lus10003767.g ID=Lus10003767.BGIv1.0 annot-version=v1.0 ATGCAGGGTTGCTTGCTCATTGGGATTGAACTCAACAGTCACGCACTGGACATGACCGGAGTCAGGCTCAAGTCGAGGTGGGCTAAGGAGTTCTGGTGGG TTTTGGAGCAGAACCGGAGTCTTAGAGAGGTAAGGCTGTCCAAGACTTGCCTTAAAGACAAGGGAGTTGTGTATGTCGCAGCAGGGCTGTTCAAGAACCA GATCTTGCAAAGTTTGTATCTTGATGGCAACTGCTTCAGTGGGGTTGGAATAGAGCATTTGTTATGCCCTTTGAGCAGATTCTCCTCCCTGCAAATCCAG GCCAATATTAGTCTTAAATCTGTAGCCTTTGGAGGGAGGAGAACTAAGATTGGAAGGGATGGAGTCACAACAATCATCCAGATGCTGACGAGTAATGGGA CGCCGACGAAGTTTGGGATATATGATGATGAGAGCTTGAAAGCGGATGACATAGTGAGAATCTTGAGAAGCTTGGAAAGAAATGCAAATATGAGTATTGA ACCAGAAATAGAAACAACAGATGTCAACTTGTTCAAGGACATGCCAGTAACCGAGCCCAAGAGCTGCCGCGTTTTCTTTTGTGGCCAAGAATATGCAGGA AAGAGCACACTATGCAATGCAGTACTGTCACAGAACTTGAGCTCTTCAAAGGAGCTTCCTTACATGAGGACCCTTGTGAACCCTGTTGAACAAGCTGTGA CAAGTGGTGGAATGAAGATTAAAACATTTAGAGATGAAGAGACCAAAATATCGATATGGAACCTTGGTGGTCAGCATGAATTTTACACCTTGCATGATCT CATGTTCCCTGGCCATGGCAGTGCATCACAGTTTGTGATCATCTCCAGTCTGTCCCAGAAACCCAGCAACCGCGACCCCAAGACACCAGCTGAGGTAGAA GAGGACTTTCAATACTGGCTGAGATTCATAGTTTCCAACTCAGAAAGAGCACTTGAGCAGTGCATACTTCCAAATGTTACCGTGGTCCTTACACATTTCG ACAAAATCAGTAGTCAGCCTTCACAAAACCTGCAGTTGACAGTGGATTCAATACAGCGAGTAAGAGACAAGTTCCGAGGATTCGTAGACTTGTATCCAAC TGTGTTCACAGTTTATGGGAGGTCCTTTGCATCAGTTAACAAACTCACTCATCATCTCCGAAAGACAAGCAAGACCATTCTCCAGAGAGTTCCAAGAATC TACCAGCTTTGCAATGATCTAATTCAGACTCTATCTGACTGGAGGACCGAAAAATATAACAAACCAGCTATGAGATGGAAGGAATTTGATGAACTTTGCC AAGTGAAAGTGCCAGCACTGAGGATTCGGTCAAGACATGATAACAGGGAGAAGGTAGAAATGAAAAGGAAGGCTGCTGCTAGTTGCCTCCATCATATAGG GGAAGTTATTTACTTTGATCAGTTAGGTGTCTTGATCCTAGATTGTGAGTGGTTCTGCTGTGAAGTACTTGGCCAACTCGTGAAACTTGATGTTAAGAAG GCTAGCTCAATGCAGAATGGATTCATCAGCAGAAAATAA
AA sequence Show only first row Show all	>Lus10003767 pacid=23180857 polypeptide=Lus10003767 locus=Lus10003767.g ID=Lus10003767.BGIv1.0 annot-version=v1.0 MQGCLLIGIELNSHALDMTGVRLKSRWAKEFWWVLEQNRSLREVRLSKTCLKDKGVVYVAAGLFKNQILQSLYLDGNCFSGVGIEHLLCPLSRFSSLQIQ ANISLKSVAFGGRRTKIGRDGVTTIIQMLTSNGTPTKFGIYDDESLKADDIVRILRSLERNANMSIEPEIETTDVNLFKDMPVTEPKSCRVFFCGQEYAG KSTLCNAVLSQNLSSSKELPYMRTLVNPVEQAVTSGGMKIKTFRDEETKISIWNLGGQHEFYTLHDLMFPGHGSASQFVIISSLSQKPSNRDPKTPAEVE EDFQYWLRFIVSNSERALEQCILPNVTVVLTHFDKISSQPSQNLQLTVDSIQRVRDKFRGFVDLYPTVFTVYGRSFASVNKLTHHLRKTSKTILQRVPRI YQLCNDLIQTLSDWRTEKYNKPAMRWKEFDELCQVKVPALRIRSRHDNREKVEMKRKAAASCLHHIGEVIYFDQLGVLILDCEWFCCEVLGQLVKLDVKK ASSMQNGFISRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10003767 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Lus10016591 [exp]	1.4	0.9016
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	2.4	0.8912
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	4.7	0.8712
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	5.7	0.8882
					Lus10021651 [exp]	6.5	0.9292
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	11.8	0.8899
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	12.5	0.8558
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10006324 [exp]	13.1	0.8416
					Lus10004294 [exp]	16.1	0.8985
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	18.7	0.8639

Compare expression of checked genes

Lus10003767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.