Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26640 519 / 1e-179 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G03340 250 / 6e-76 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26440 249 / 8e-75 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT1G13960 236 / 7e-71 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G38470 232 / 5e-69 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G04880 231 / 5e-69 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G30250 212 / 9e-63 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 192 / 6e-56 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT5G56270 168 / 2e-44 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT5G07100 144 / 2e-39 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016595 [exp] 1034 / 0 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 557 / 0 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 332 / 9e-109 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10032887 [exp] 321 / 2e-100 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 315 / 3e-98 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026838 [exp] 278 / 3e-84 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 268 / 1e-82 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10015377 [exp] 262 / 7e-80 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10006368 [exp] 261 / 7e-80 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361600 [exp] 664 / 0 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 647 / 0 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G472800 [exp] 318 / 3e-99 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 312 / 3e-97 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G086000 [exp] 301 / 7e-93 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 277 / 4e-85 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.010G163000 [exp] 265 / 9e-82 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.004G120800 [exp] 264 / 1e-80 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.019G053900 [exp] 261 / 8e-80 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.008G091900 [exp] 257 / 9e-79 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10003769 pacid=23180844 polypeptide=Lus10003769 locus=Lus10003769.g ID=Lus10003769.BGIv1.0 annot-version=v1.0 ATGGAGACGACTAGTTCTACTACTTCTTCTTCTACACCTGATGCTTCCGACTCCAATGACTTCCGCCTTCCTGCTCCTCCTGCTTCAGCTTGTGATTCCT CCGATCACCGCCCTGGGACTTGTGCTGCTGCTGGCGGAGCTAGGTATAAGCTTATGTCGCCGGCCAAGATACCGATCTCCAGGTCTCCTTGCATCACCAT CCCTCCGGGCCTTAGTCCCACTTCCTTTCTCGAGTCCCCTGTCTTGCTCTCCAATATCAAGGCAGAGCCTTCCCCAACTACAGGTTCTTTCATGAAGCCT CTAGCAGCTCATAGCTCTTTCTTGTCTACTCCCTATTCAGCACCTGCGGTTTCATCGGACACCTTTGGACAAAGAGGATCCAGCTTCTTTGAGTTCAGGC CTCCTTCTATTGCAAATATGACTTCTGCAGATATGAACAATCAGAGAACTGATCAATCTGTACGAATCCAAGGCACTTCTCAATCCCAGTTTCAACCATT TTCATCGTTGTCTTCACCTAAATCAGAGATGATAGCCTCCTCAAATGAGTTAAGTCTGACTCCTCGTCACTTGGTTAGCTCTGAGGGTACTGGACCTGCT GATATTGAAACCGATGAATCAAACCAAATAGGAAACTCTAATAGCGGTATTCAGGCCTCACAGTATGATCTTAAAGGAGGAACTGTGAATTCAGCGACAT CAGATGATGGATATAACTGGCGTAAATATGGACAGAAGCATGTGAAGGGAAGTGAGTTTCCTCGTAGCTATTACAAATGCACACATCCAAATTGTGAGGT GAAGAAGTTATTTGAGCGCTCTTATGACGGGCAAATAACAGAGATAATCTATAAGGGCACACATGACCATCCAAAACCTCTACCTAGTCGGCGATACACT GCTGGAACTCTTTTGTCTGTCCAAGAAGAAAGATCTGATAAAATATTATCTGGGAGAGATGGTAAGGAAAAACCTTTGAACCCCATCTATCTAGATTTTT GCACTTCTCCTGCTCTGAAGGTTCTTTTTTCTCATTTGCTTCATTCTAAGTGGGCTTTTGATCTCAATGTAGAGAAGTCATCTGGTGCATACAGTCAATT GTCCAACACCTCAGAACCGAATGGTACTCCTGATCTGTCTCCTGTTACAGCAATTGATGATATCCCAGAAGGTACTGAAGAAGATGATGATCCACTTTCA AAGCGCAGGAGGATGGATATTGGGAGCTTCGATGTTACTCCAGTGGTTAAGCCTATCCGTGAACCACGTGTTGTTGTTCAGACTCTTAGTGAGGTTGATA TACTTGATGATGGGTACAGGTGGCGCAAATATGGGCAAAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTACTACAAGTGCACAAATGCTGGATGTCC GGTGAGAAAGCATGTAGAGAGGGCATCACATGATCCAAAAGCAGTTATAACTACTTACGAAGGGAAACACAACCATGATGTACCCGCAGCAAAGAATAGC AGTCATGATGCAGCCGCTAATGCTATGAATGGTCCATCGAGGTTTAGATCAAACGAAAGCGACAGACTCAGCCTTGATCTCGGAGTTGGGAGGGGTTCTG CTGCCGAACATGGGCAGAGCAGCCGGTCCAGTTTAAGCAAAGTTGCAAATTACTACGGCATTCTAAACGGTGGGATAAACCAGTATTTGTCGTCTCGACA AGCTCCAAGTGAAGGGCGGATTGTTGAACTTGAAGCTCCGAACCATTCATCTTACCCTTACCCACCGAATGTGGGAAGATTATTAACAGGCCCTTGA
AA sequence Show only first row Show all	>Lus10003769 pacid=23180844 polypeptide=Lus10003769 locus=Lus10003769.g ID=Lus10003769.BGIv1.0 annot-version=v1.0 METTSSTTSSSTPDASDSNDFRLPAPPASACDSSDHRPGTCAAAGGARYKLMSPAKIPISRSPCITIPPGLSPTSFLESPVLLSNIKAEPSPTTGSFMKP LAAHSSFLSTPYSAPAVSSDTFGQRGSSFFEFRPPSIANMTSADMNNQRTDQSVRIQGTSQSQFQPFSSLSSPKSEMIASSNELSLTPRHLVSSEGTGPA DIETDESNQIGNSNSGIQASQYDLKGGTVNSATSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSYDGQITEIIYKGTHDHPKPLPSRRYT AGTLLSVQEERSDKILSGRDGKEKPLNPIYLDFCTSPALKVLFSHLLHSKWAFDLNVEKSSGAYSQLSNTSEPNGTPDLSPVTAIDDIPEGTEEDDDPLS KRRRMDIGSFDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNS SHDAAANAMNGPSRFRSNESDRLSLDLGVGRGSAAEHGQSSRSSLSKVANYYGILNGGINQYLSSRQAPSEGRIVELEAPNHSSYPYPPNVGRLLTGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	0	1
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	5.5	0.6886
AT1G77810			Galactosyltransferase family p...		Lus10024750 [exp]	14.0	0.6595
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	15.0	0.7030
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	16.8	0.6864
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	20.9	0.6547
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	26.9	0.6979
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	30.9	0.6422
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	32.4	0.6674
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	32.6	0.6247
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	34.2	0.6894

Compare expression of checked genes

Lus10003769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.