Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50600 55 / 7e-09 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 51 / 2e-07 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 42 / 0.0001 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016596 [exp] 356 / 5e-122 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 70 / 6e-14 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 66 / 2e-12 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 45 / 2e-05 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361700 [exp] 192 / 1e-58 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 122 / 2e-32 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.016G009700 [exp] 86 / 2e-19 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 86 / 2e-19 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003773 pacid=23180852 polypeptide=Lus10003773 locus=Lus10003773.g ID=Lus10003773.BGIv1.0 annot-version=v1.0 ATGCAAGAATCTCAGAACAATATGTTTGCTGGTGGGTCGGGCTTGTTCTTTAACCAGCCTTTGCAAGATAAGGAGTCTTATTGCTGGTCCTGCATTCAGA ATGTCCCTCACTATCCATGTTCTGAAGTTGACAAGACCCATCTCTCAGCTACAACTTGTCAGCAACACTGTACCCTAGAGTCCTCATCTGGAACTGGTGG CTCTGCTGCTCACAATTCTCCGTCTGCTACCAGTTTGTCTACTAATGAGAGTGGTGTTTCACAGCACAACTCCTACTCATATCCATCTGATGTTCATGAT TCCCCTGACCAGTCTAGTGGTTCGCCAACAAGTGAGTTTTATGTTACCCACAAGCTAAGGGAACTGGAAACTGCCATGCTAGGGCCTGATTCGGATATCC TCGATGCATTCAATGACATAATACCAACTGGAGGCAACCAAATCATAACAGAGGCTGATAAGTGGAAGTTTCTTGGGGAAATAATATCTAGAGGAGATCT AAGAGAAGGACTTCGCGGAACCTGCACCTGCCAGCATGGAGCTTCTGTCATACATGCATCTGCTTTACGAGATATGCCCCTACTTCAAGTTTGGATACAT GTCAGCAAATGGAGCGATAGCTGA
AA sequence Show only first row Show all	>Lus10003773 pacid=23180852 polypeptide=Lus10003773 locus=Lus10003773.g ID=Lus10003773.BGIv1.0 annot-version=v1.0 MQESQNNMFAGGSGLFFNQPLQDKESYCWSCIQNVPHYPCSEVDKTHLSATTCQQHCTLESSSGTGGSAAHNSPSATSLSTNESGVSQHNSYSYPSDVHD SPDQSSGSPTSEFYVTHKLRELETAMLGPDSDILDAFNDIIPTGGNQIITEADKWKFLGEIISRGDLREGLRGTCTCQHGASVIHASALRDMPLLQVWIH VSKWSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	2.2	0.8784
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10034931 [exp]	2.6	0.8303
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	4.0	0.8427
AT3G22430			unknown protein		Lus10041204 [exp]	5.5	0.8309
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	7.2	0.8369
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	8.3	0.8397
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	8.9	0.8294
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	9.5	0.7552
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	11.2	0.7842
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	11.4	0.7947

Compare expression of checked genes

Lus10003773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.