Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023683 [exp] 78 / 2e-19 AT1G48120 45 / 2e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10019590 [exp] 48 / 7e-08 AT1G48120 45 / 3e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10008399 [exp] 40 / 0.0001 ND / Lus10015352 [exp] 39 / 0.0002 ND 38 / 2e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10003774 pacid=23180855 polypeptide=Lus10003774 locus=Lus10003774.g ID=Lus10003774.BGIv1.0 annot-version=v1.0 ATGGACCAGAATCATTATGGAGCATTTGAAGCCCATCGAACTCATCCAGAAGGCCAAATTCAAGAGCCAAACTCGAGTGGCCTCGCTGCGGTGATGACGG GAGAAGGATATCTTGGCTTACAAGTAAAGGAATTCCTTCTCCTTTCTTGCTCTGGTGAACAAGGCATTTTCCACATGTACCATGGGGAGTGCACGTTGAC TCTAGAGGACGTGGCGATGTTGACAGATTTTCCAGTGGATGGTGATGCGGTCTACTACCCTCTCGCTCGTTCTGGGCGGCTCATGCTAGACTTGTTAGAG AAGGTTTTTAGGAGCGAGGCTGATGGTGATGCTGTATGCTACCCTCTCACAGGACGGACGACTGAGGATTGGGTGGTTGTACTTCACGTTCAAGAAACTG GAACGGATTCCTGTCAATAA
AA sequence Show only first row Show all	>Lus10003774 pacid=23180855 polypeptide=Lus10003774 locus=Lus10003774.g ID=Lus10003774.BGIv1.0 annot-version=v1.0 MDQNHYGAFEAHRTHPEGQIQEPNSSGLAAVMTGEGYLGLQVKEFLLLSCSGEQGIFHMYHGECTLTLEDVAMLTDFPVDGDAVYYPLARSGRLMLDLLE KVFRSEADGDAVCYPLTGRTTEDWVVVLHVQETGTDSCQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003774 [exp]	0	1
					Lus10003695 [exp]	1.0	1.0000
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	2.0	1.0000
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	2.4	1.0000
					Lus10020958 [exp]	2.8	1.0000
					Lus10021906 [exp]	3.2	1.0000
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	3.5	1.0000
AT2G17030			F-box family protein with a do...		Lus10022618 [exp]	7.9	0.7407
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	7.9	1.0000
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	8.1	0.9159
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	8.2	0.8781

Compare expression of checked genes

Lus10003774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.