Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55580 481 / 4e-167 Mitochondrial transcription termination factor family protein (.1) AT4G38160 100 / 3e-23 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G21710 101 / 1e-22 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT2G34620 94 / 4e-21 Mitochondrial transcription termination factor family protein (.1) AT1G78930 92 / 1e-19 Mitochondrial transcription termination factor family protein (.1) AT2G03050 82 / 5e-17 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 82 / 7e-17 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT4G02990 83 / 1e-16 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT3G18870 77 / 2e-15 Mitochondrial transcription termination factor family protein (.1) AT2G44020 78 / 3e-15 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013854 [exp] 105 / 7e-25 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10042322 [exp] 97 / 3e-21 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Lus10004219 [exp] 95 / 5e-21 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10029422 [exp] 94 / 1e-20 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10042342 [exp] 87 / 7e-19 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1) Lus10021297 [exp] 86 / 4e-18 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026325 [exp] 85 / 5e-18 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 85 / 7e-18 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10014567 [exp] 85 / 1e-17 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361800 [exp] 556 / 0 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 103 / 2e-23 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G170300 [exp] 101 / 6e-23 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.004G209400 [exp] 99 / 1e-22 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G116200 [exp] 100 / 5e-22 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.011G081400 [exp] 94 / 5e-21 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 84 / 7e-18 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 81 / 3e-16 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.006G205000 [exp] 79 / 6e-16 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.016G072200 [exp] 79 / 9e-16 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10003775 pacid=23180859 polypeptide=Lus10003775 locus=Lus10003775.g ID=Lus10003775.BGIv1.0 annot-version=v1.0 ATGGCAGTTTCGTCGCTCTATCCCTTCCGTCCGACGCAGCTGGCATGCTTCCACTGTCACAGCAGCGCCGCCGGAATGGTTTTTCAGCTCCGGCGAATGG GGATAAAGAGATGCTGGTATGTGGTTCCGTGCGCACATTCCAATGCTAGGATTCTCAAGCCCAACCGCAAGTCTAAGTTCGGCGAAATGCTATTTACCTA CGATAGTGATGATGATGAGGAGGAGGAAGAAGAAGATTACGACGCGGATGATTGGGTTTTGGATGATGAGTTTGCTGAACCATCAGGTCTTTTTGAGGTT AATGGGAAGCCAGTCAAGTCCCGAAAGAAAACTAATTCCAAACAAGGCAAGCAGAGGCAAGTGAATACAAGACTAAGCGATACAATATCAGACACAAATG GTGTTAGAAACTTACGCCACACTAAAAGCAAAACAGAGCAGCTCGCAAGGAAATCAGCTCATAATAGCTATAAAGAGTTATCTGAAGAGATAGTTTTGGA TAAGAGATGGCTCCCACTGCTTGATTATTTGACTACCTTTGGACTCAAGGAATCACACTTTATCCGAATTTATGACAGGCATAAGCCATTTCTTCAAATA AATGTAAGTTCTGCACAGGAGAGATTGGAATACCTGATGAGTGTTGGTGTGAAGCAAAGAGACGTTAAACGAATCCTCTTAAGACAGCCACAGATTCTTG AATATACGGTTGAGAAGAATTTGAAGCCTCATGTTGCTTTCTTGAGGAGTTTAGGTGTTCCAAATTCCAGAATGGGGCAGATAATTGCTGCTTCGCCATC CTTGTTTTCCTACAGTGTTGAGAGATCATTGAAACCAACTGTTCGATATTTGATTGAGGAGGTTGGTATAGATAAAAAAATCATTGGGAAAGTCGTGAAG TTGAGCCCCCAAATCTTGGTTCAGAGGATTGATATCTCATGGAACACTCGATATATCTTTCTGTCTAAAGAGTTAGGCGCACCTAGAGACAATATTGTGA AGATGGTAACGAAACATCCTCAACTTTTGCATTACAGCATTGATAATGGGTTGCTTCCAAGGATTAACTTCTTGAGGAGTATCGGGTTGAATGACTCTGA AATTGTGAAAGTCTTGACTAGTCTTACACAGGTATTATCCTTGTCGCTGGAAGACAACCTTAAGCCAAAGTACATGTACTTAGTCAACGAACTCCAGAAT GAAGTAAAGTCCTTGACTAAGTATCCCATGTACTTTAGCCTATCTTTGGACCAGAGAATTCGCCCTCGCCATAGGTTCTTAGTTTCCTTACAGAAAGCTC CAACTGGACCATTTCCTCTGAGTTCATTTGTTCCAACAGATGAAAGCTTCTGTCAGCAGTGGGCTGGAACTAGTCTGGATACGTATCTGAATTTTCGGCA GCAATTACTACTCAAGAAATTGGCGAAGAAATACGAAAGACATGGATAG
AA sequence Show only first row Show all	>Lus10003775 pacid=23180859 polypeptide=Lus10003775 locus=Lus10003775.g ID=Lus10003775.BGIv1.0 annot-version=v1.0 MAVSSLYPFRPTQLACFHCHSSAAGMVFQLRRMGIKRCWYVVPCAHSNARILKPNRKSKFGEMLFTYDSDDDEEEEEEDYDADDWVLDDEFAEPSGLFEV NGKPVKSRKKTNSKQGKQRQVNTRLSDTISDTNGVRNLRHTKSKTEQLARKSAHNSYKELSEEIVLDKRWLPLLDYLTTFGLKESHFIRIYDRHKPFLQI NVSSAQERLEYLMSVGVKQRDVKRILLRQPQILEYTVEKNLKPHVAFLRSLGVPNSRMGQIIAASPSLFSYSVERSLKPTVRYLIEEVGIDKKIIGKVVK LSPQILVQRIDISWNTRYIFLSKELGAPRDNIVKMVTKHPQLLHYSIDNGLLPRINFLRSIGLNDSEIVKVLTSLTQVLSLSLEDNLKPKYMYLVNELQN EVKSLTKYPMYFSLSLDQRIRPRHRFLVSLQKAPTGPFPLSSFVPTDESFCQQWAGTSLDTYLNFRQQLLLKKLAKKYERHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	1.4	0.9500
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	1.4	0.9608
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	2.8	0.9466
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	4.5	0.9454
AT1G62780			unknown protein		Lus10024592 [exp]	8.5	0.9379
AT2G04360			unknown protein		Lus10016086 [exp]	9.2	0.9240
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	9.4	0.9268
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	10.4	0.9416
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10029134 [exp]	11.1	0.9064
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	11.1	0.9485

Compare expression of checked genes

Lus10003775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.