Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30860 451 / 7e-154 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT2G44150 194 / 2e-56 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 187 / 5e-54 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT1G76710 134 / 2e-33 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G77300 132 / 6e-32 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT5G42400 110 / 8e-25 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 97 / 9e-21 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G05830 92 / 3e-19 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G27910 92 / 5e-19 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 89 / 3e-18 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006888 [exp] 622 / 0 AT4G30860 362 / 5e-121 ASH1-related 3, SET domain group 4 (.1) Lus10039118 [exp] 211 / 9e-63 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 205 / 3e-59 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10016600 [exp] 141 / 5e-36 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10028662 [exp] 132 / 1e-31 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 132 / 1e-31 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10025172 [exp] 105 / 3e-23 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10022483 [exp] 103 / 1e-22 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10016051 [exp] 103 / 2e-22 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102100 [exp] 450 / 4e-153 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.007G147200 [exp] 208 / 1e-61 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 207 / 3e-61 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G195400 [exp] 141 / 6e-36 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.005G182100 [exp] 133 / 4e-32 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 131 / 1e-31 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G260100 [exp] 109 / 1e-24 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 107 / 7e-24 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.007G033000 [exp] 100 / 7e-22 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 97 / 8e-21 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10003777 pacid=23162272 polypeptide=Lus10003777 locus=Lus10003777.g ID=Lus10003777.BGIv1.0 annot-version=v1.0 ATGCCGGACCTCGGCAATGCTACACTTCACTGCTCTACTCTGAAGAACCTTCCTTCTCCGGATGCTCCTCCTCCTGGCGAGCTTGAAGGAAACAATAGTC CGGTCAAAGCGCTAGTTAACGGCTGCAACTGGAACCTGAACCCCCGGCTGCAGAACGGGAAAAATCGATGTAATCGAGATTTAATTAGGGTTTTGAGCCG TTGTCGTGGTGGCGTATCAAGTAAAAAGGGTTGCGGTGCCAAGTGTTTGGAGGATTATGTGAACGATTGGGTTCGGCAGAAGGTGGAAATGGGCGCTTCG TCATCCCAATGCTACCTTCCGTTTCTTGCCGGAGGGAAGAAGATGGTTGAATGTCTTGTTTGCCATCGCTCTATCGATCCTGAGGAGGAGCTTGCTTCTT GCTCTGTTCGGAACTGTGGAGGAGTTTGTCATTCGGAGTGCGTGAAGGAAAAGGTTAAATTCTCGAAAGGGACGAAATTCAAGTGCCATCAGCATGCATG CTTTAAATGCAAGCAGAAACGGATATTGAGGTGTGTAAGATGCTCGATTGCTTTCCATGATAAATGTGCACCATGGCCTGCAATCCATTTGACGGACCAA CCAGGGCGAGCAATTTGCTGGAGGCATGATGATGATTGGAGACTGGATAAGGTTAGAGTGGTTAGGTGCCTAACCCATTTATTTGATTATCAGTTGATTG TCAAGGTAGAAAAGGAATACTTTGGTATTTGGGTCCAATATATAAGCTGCTCCAAGTCTTGCCATTGCTCTGAAAACTGCACAAACAGGCCATTTCGCAA GGATAAAAAGATAAGAATTGTTAAGACAGAACTCTGTGGTTGGGGCGTAGAAGCAGCCGAAGCGATAAATAAAGGCGAGTTTGTCATAGAGTACATAGGG GAAGTCATTAGTGACGCACTGTGCGAAAAGAGGCTCTGGGACATGAAGTACAGGGGCGTTAACAACTTCTATATGTGTGAAATACGGAAGGACTTCACAA TAGATGCAACCTACAAGGGAAATTTATCTCGCTTCTTGAACAACAGTTGCGATCCCAACTGTATACTTGAGAAGTGGCAAGTCGAGGGGGAGACGAGAGT TGGTGTGTTTGCTGCTCGATCCATAGAAGTGGGAGAGCCTTTGACATATGATTACAGATTTGTGCAGTTTGGACCAGAAGTGAAGTGCTACTGTGGGGCA GCAAACTGTCAGGGATACCTTGGAACCAAAAGGAAGGTGACTGCGGAGTTGAATATAGAGCTGAACATATACTGGGGTGCTAAACGCAGGAGATCATCAT CATCCATGCCTTGTTTAGCTATTGTTGCCGTCCAACCACAATCCGAAAACAACCGACAACAGGTGATTGCAATTGGACGGGTGATGGTTGCATTTCAATC TCGCGAGATGAAGATTCCATCGGCGAGCATAGAGCCGGTGGAACACCATGTATGTGGTTTGATGCGACATCGAGGGAGAAAGCATACAACTACTCGGGCG GTAAATGGGGTCTACAGTAGGAAACTGGCGAAATCGCCAAAGAAGGGAGCATACAACTACTCCTGCAACCATGTTATAGGTGGGTCAGACGGGTGTGACC CGCCGGGCTGCATATCGTGCATGGGGAGGCTGCAGAGACTGGCTAGGCTCTGGCAACAGAAGTGGATGCCGGTGACGGAATTGATTACTCCGACTGGTTC TTATCCGATGATGTGTACGACACTATCGGTGAAGCGGCGCAAGCAGCAAAACAGATTGCTTTGA
AA sequence Show only first row Show all	>Lus10003777 pacid=23162272 polypeptide=Lus10003777 locus=Lus10003777.g ID=Lus10003777.BGIv1.0 annot-version=v1.0 MPDLGNATLHCSTLKNLPSPDAPPPGELEGNNSPVKALVNGCNWNLNPRLQNGKNRCNRDLIRVLSRCRGGVSSKKGCGAKCLEDYVNDWVRQKVEMGAS SSQCYLPFLAGGKKMVECLVCHRSIDPEEELASCSVRNCGGVCHSECVKEKVKFSKGTKFKCHQHACFKCKQKRILRCVRCSIAFHDKCAPWPAIHLTDQ PGRAICWRHDDDWRLDKVRVVRCLTHLFDYQLIVKVEKEYFGIWVQYISCSKSCHCSENCTNRPFRKDKKIRIVKTELCGWGVEAAEAINKGEFVIEYIG EVISDALCEKRLWDMKYRGVNNFYMCEIRKDFTIDATYKGNLSRFLNNSCDPNCILEKWQVEGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCYCGA ANCQGYLGTKRKVTAELNIELNIYWGAKRRRSSSSMPCLAIVAVQPQSENNRQQVIAIGRVMVAFQSREMKIPSASIEPVEHHVCGLMRHRGRKHTTTRA VNGVYSRKLAKSPKKGAYNYSCNHVIGGSDGCDPPGCISCMGRLQRLARLWQQKWMPVTELITPTGSYPMMCTTLSVKRRKQQNRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10003777 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	4.2	0.9418
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	7.1	0.9376
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	10.2	0.9363
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	12.4	0.9327
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	14.0	0.9335
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	14.1	0.9324
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	14.5	0.9317
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	17.6	0.9277
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	19.1	0.9267
AT2G37960			unknown protein		Lus10035544 [exp]	21.0	0.8929

Compare expression of checked genes

Lus10003777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.