Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23910 400 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 400 / 5e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 155 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 153 / 4e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 147 / 7e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 147 / 1e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 140 / 3e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 130 / 1e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 131 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 129 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006885 [exp] 553 / 0 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 236 / 5e-77 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 172 / 5e-51 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009549 [exp] 168 / 2e-50 AT2G23910 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 155 / 9e-45 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008774 [exp] 142 / 3e-41 AT5G14700 253 / 5e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 146 / 4e-41 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10039595 [exp] 144 / 1e-40 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 145 / 9e-40 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178700 [exp] 437 / 8e-156 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 436 / 2e-155 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 258 / 3e-85 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 255 / 5e-84 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 254 / 1e-83 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 176 / 1e-52 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 162 / 2e-47 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 157 / 2e-45 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 150 / 7e-43 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 148 / 2e-42 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10003780 pacid=23162269 polypeptide=Lus10003780 locus=Lus10003780.g ID=Lus10003780.BGIv1.0 annot-version=v1.0 ATGGGTCCATGGATTCACCCAGTTTGTGTTCTTGATGCTTCGAGTTCCGTAGGGTTTTGGGTACTCAAGGGTTTGTTGAGTAGAGGGTATTCAGTTCATG CGGCTATTCAGAACAAGAAAGGAGGAGAAGCTACAGAGATTGAGAAGAAGATAAGAGAAATCGCAGTAGAAGAGAAGAAGAAGGTAGTTGTGTTTGATGT AGATGTGTTGGATTATCAGACCATTTTAGTTGCTTTGAAAGGCTGCTCTGCCGTTTTCTGCTGCTTGGATTTCCACGATGGATACGACGATGAGAAAATG GTGAATTTGGAGGTGAGAGGAGCAATCAATGTGGTGGAAGCTTGTGCACAGACTGATACCATAGCCAAGATAGTGTTCACGTCCTCTTTGACTGCTACAA TTTGGAGGGAGGATATTTGCTCTGAGAAGGATGTCGATGAGAGGTCTTGGAGTCACCAATCTTTCTGCAGGAAATTCAAGCTATGGTACGCATTGGCAAA GACACTCTCAGAACAGGCAGCCTGGGCACTCGCAATGGACAGAGCCCTTAACATGGTCTCCATCAACCCTGGTCTCGTCCTTGGTCCCGGTGTTTCCCAA CAGAACCCTCAATCCACCATGGCATACCTCCAAGGTGCGGCTCAAATGTTTGAGAATGGAGTTCTGGCATATGTCGATGTGAAATTCTTGGCCGATGTCC ACATTCGAGCGATGGAGGATCAATCGACATGCGGGCGATACTTGTGCTTTGACCAGATTGTGAATACGGAGGATGAAGCTGTGAAGATTGCACAAGGATT GAGTCCCTTGATTTCCTTGCCACCAATGTATGAGTGTGGTGGAAGTGAGGTTTACGAGGAGAGGTTGACGAACAACAAATTAAATAAGCTAGTGGAGGGC ACTGCTTATTGA
AA sequence Show only first row Show all	>Lus10003780 pacid=23162269 polypeptide=Lus10003780 locus=Lus10003780.g ID=Lus10003780.BGIv1.0 annot-version=v1.0 MGPWIHPVCVLDASSSVGFWVLKGLLSRGYSVHAAIQNKKGGEATEIEKKIREIAVEEKKKVVVFDVDVLDYQTILVALKGCSAVFCCLDFHDGYDDEKM VNLEVRGAINVVEACAQTDTIAKIVFTSSLTATIWREDICSEKDVDERSWSHQSFCRKFKLWYALAKTLSEQAAWALAMDRALNMVSINPGLVLGPGVSQ QNPQSTMAYLQGAAQMFENGVLAYVDVKFLADVHIRAMEDQSTCGRYLCFDQIVNTEDEAVKIAQGLSPLISLPPMYECGGSEVYEERLTNNKLNKLVEG TAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10003780 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	7.3	0.8449
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	14.0	0.8555
AT1G11655			unknown protein		Lus10002065 [exp]	23.0	0.8323
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10000676 [exp]	26.4	0.8200
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	33.7	0.8088
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	38.0	0.7802
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	40.0	0.8116
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	40.5	0.7960
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	41.5	0.8091
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	42.3	0.7880

Compare expression of checked genes

Lus10003780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.