Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02790 311 / 2e-102 PGA4 polygalacturonase 4 (.1) AT4G18180 261 / 4e-83 Pectin lyase-like superfamily protein (.1) AT2G43890 245 / 3e-77 Pectin lyase-like superfamily protein (.1) AT2G43870 241 / 6e-76 Pectin lyase-like superfamily protein (.1) AT1G05660 238 / 1e-74 Pectin lyase-like superfamily protein (.1) AT3G59850 238 / 2e-74 Pectin lyase-like superfamily protein (.1) AT1G05650 238 / 2e-74 Pectin lyase-like superfamily protein (.1) AT3G07820 235 / 2e-73 Pectin lyase-like superfamily protein (.1) AT3G07830 232 / 4e-72 Pectin lyase-like superfamily protein (.1) AT4G35670 231 / 1e-71 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012489 [exp] 746 / 0 AT1G02790 307 / 6e-101 polygalacturonase 4 (.1) Lus10005304 [exp] 247 / 1e-77 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 244 / 2e-76 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 244 / 3e-76 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 242 / 1e-75 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 240 / 7e-75 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 238 / 1e-74 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 238 / 2e-74 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 237 / 3e-73 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202100 [exp] 338 / 3e-113 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 337 / 1e-112 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.010G011200 [exp] 305 / 4e-100 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.010G007300 [exp] 290 / 2e-94 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 289 / 4e-94 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.009G169100 [exp] 268 / 8e-86 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 252 / 5e-80 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G145300 [exp] 249 / 7e-79 AT2G43890 566 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 249 / 1e-78 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 241 / 6e-76 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10003782 pacid=23157505 polypeptide=Lus10003782 locus=Lus10003782.g ID=Lus10003782.BGIv1.0 annot-version=v1.0 ATGTCGATTGAAATAGAATTATTGAGTAGGAGAATTGTTATTTTTATTTCTCTCCTGATTTTCTTATCATCTTTTACATATGGCTCTTTAAAAGAAGTAA ATATCCCCCACCGTGGTCTTCACGTTGTCGACCCGCCACCTAATATTGAGGTCCCACGCACAATTGTCGATGTCATGCATTTTGGAGCGAAAGCAAATGG AAAAGATGATGATGTCACGGCATTTATGCAAGCGTGGCAACAGGCATGTAAAAAATGCCCAGATCCAACAAAACTTCTAATTCCAGAAGGCATATATTTA TCATCCCCCGTGATTTTCCAAGGACCCTGTGTAAGCAAAGTACCCATACTCGTTGAAGTGAGAGGAAACATAATCGCTTCAGGTGACTTGAGCACTTACG CTGAAGATTATTGGTTTATGTTTAATAAAATCAATGGCTTGATTCTCAATGGTGGAGGAACATTTGACGGTAGAGGTCCTCAAGTTTGGGCAACAGTAAA AAAGGGCTCAAAGGGAAATCGCCCATCTTCTATTGTGATCCGAAGCGTGGACAATGTAGTGGTGCACGACATAATCTCCGTGGACAGCAAGTTCTTCCAT TATCACGTGTCTAGATGTGACAACTTCACTGCTTTCAACCTACGCATGACTGCACCGGATGACAGTCCCAATACTGATGGCATTCATATTAGTAGCAGCA ATGGTGTCCATATATCCAACAGTATCATTGCAACTGGAGACGACTGCATATCAGTTGGCCATGGTGTTAACAATGCTAACATATTTGGCATCACATGTGG ACCTGGACATGGCATTAGCATTGGCAGTCTGGGAAAGAGAGAGGGAGAAACAGACGTTTGTGGAATTACAGTGACCAATTGTACATTAATTAAAACGGAC AATGGCGTGAGAATAAAAACATTTGCCTCGAAGATTCCACTCAAAGCTTCTTCGATTACTTTCCAAGACATTATTATGCACGAAGTTGAGAATCCTATTA TCATTGACCAAAATTATGGCTCCAAAAATAAAAATGGGGCATCTAATGTGAAGGTGAGTGCAGTGAAATACAAAAACATTCGAGGAACGACAGTTTCAAA TGAAGGAATCGTCTTGGATTGTAGCACAGTAGCAGGTTGTGATGGAATCGAGTTTGTTGATGTCTGTCTAGACTTTGTCACCAATCCCGCTATCCAATCA GACAAGGCAATCGCTGCGGGTTTTACAGCAATTTGTAATAATGTTAAAACTACATATGTGGGTACTAACAAAATACCAATATGTGAGTGA
AA sequence Show only first row Show all	>Lus10003782 pacid=23157505 polypeptide=Lus10003782 locus=Lus10003782.g ID=Lus10003782.BGIv1.0 annot-version=v1.0 MSIEIELLSRRIVIFISLLIFLSSFTYGSLKEVNIPHRGLHVVDPPPNIEVPRTIVDVMHFGAKANGKDDDVTAFMQAWQQACKKCPDPTKLLIPEGIYL SSPVIFQGPCVSKVPILVEVRGNIIASGDLSTYAEDYWFMFNKINGLILNGGGTFDGRGPQVWATVKKGSKGNRPSSIVIRSVDNVVVHDIISVDSKFFH YHVSRCDNFTAFNLRMTAPDDSPNTDGIHISSSNGVHISNSIIATGDDCISVGHGVNNANIFGITCGPGHGISIGSLGKREGETDVCGITVTNCTLIKTD NGVRIKTFASKIPLKASSITFQDIIMHEVENPIIIDQNYGSKNKNGASNVKVSAVKYKNIRGTTVSNEGIVLDCSTVAGCDGIEFVDVCLDFVTNPAIQS DKAIAAGFTAICNNVKTTYVGTNKIPICE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10003782 [exp]	0	1
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Lus10023137 [exp]	1.0	0.9518
					Lus10041665 [exp]	1.4	0.9450
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	1.7	0.9317
AT2G21720			Plant protein of unknown funct...		Lus10010668 [exp]	3.5	0.9242
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10016256 [exp]	9.2	0.7139
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	10.5	0.9057
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10035445 [exp]	12.6	0.8327
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	13.4	0.8514
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	14.1	0.8462
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	18.2	0.7290

Compare expression of checked genes

Lus10003782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.